RNA id: TU75848


Basic Information

Item Value
RNA id TU75848
length 2543
lncRNA type sense_over
GC content 0.38
exon number 1
gene id AMCG00020053
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8044275 ~ 8051147 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAGAAGTGACTCATGGGACCGGAAAGGTCTTTCAAGCGGGGTCAGGTCTGAGAAAGCTGCTGCTGACACTTCAATCCTGTTGTTCGCTCTCTTTGCTGGCTAGCCATTCAATTATGCAGCGTGggtaaatacattaatcataatGCAATTTCTGAAGCACGGAGTTGTTGATATGTTTTCTATAgagttatatataaaataatactagTGTGCTGATTCCTCTGCGTTTTAGGCTATCACTGAGGCCCTGACAGCCAGGCCCTCTTGTGCGCGGCGCGTTGTTTCCGCGGGGACGGTGGCCGAGGTGGGACACTGTTGCCACAGGCAGCAACATTGTTACAGACATGATCGAAAACCAGGGCGAAGCACAGCTGAGACACAGCAATGGACGCAGCAAAGCGGTGCAGTTTCTGTGTGGATTAAATATATGACCCGGCAGGGGGGAAACAATTCGTACTCTTATTCGGAACAGTAAAGACACGATGAAAACAAATCGGATTATCAGATCTGTCATCGTCGCAAGATTATACTCGTTGCCACGACGGAAGATAGCGACCACTTTGGATCATGTTTATTGACATGTCtctcaacaataataatcatttggAAAGTTATCGTCTCTTTGTTAACGCCTGCTGGGTGTTTCAGTGCAGGACCTGACCCAGGCGGTTCTgtatagttattttcttcaattgAATTGTGCTGTTCATATTGAAGTCTCCTGCTGACAAAGATACAGCATGAAATGCATATTGCTCCCGCGATCAACCTGGAGGTGGTATCTGCATCAGAAAACAGTTGGATATCATACAGCTCCTTGGATTTGGGGCTTTAAATGAAGATGATCCTtgttatgtaaaaacaaacaggtaGCATATTGTATCCTATTTTAGGGCAGAGGATGAATTTGGGTTTGGCTAtagatacagaaataaaatggcacTGAACTGATTTTGCACCAcacaagaaaaaggaaattagtCAAGAAAGGTGACTAACCTTTTTATGAACCATTCAAGAGGACAAATCCAACACTGAGCGAGTTGGGGGTCCAGCGTCATTTCAATGACTGAAGACCATTGACAGAGACTGAGAGGATGGAAGTGCAGTAACATGAGTGGCAGAGTGCCATTGGCAGAAAAAGCCCTTTCAGAGGGATATGCAAGACTGAGGTACCAAGACACCTCACTGCTCATCtggcagcaacagcaacaagaaATGGAGCGGGCACCGCCCAGTACCTATCTCAGCCGAAGTCAGAGCACCTGGTATACTCGGTATGGGAACCAGGCAATCTTGATTAAGGATAAAACCAAGCTGGATGCCCCCAGTGACACGGGGCAATCGAGGATCTGCTCAGTAATGTGATGGGGACACATCCCACAATGCTGGCTTCAAGGATGCAAATGCTAAGAAAGATAGTTGTCAtgcctgaaaataaacatttcattcacaagcttaattatacaaatatgacCACAGAATCATaggtttattgtatttaaattctagatgttttggattgttttggtgttatatatttaattaaatgggaGTTATAGACTGCATTTTAGTTTCCTTAcaagagaaaatataatttatttcagcattaAGATTTTTCCAAAATCTTTCAACAGAACATCAAGTGCTGATGTTGAAGAGCAAATAGTGGGGTTTGGTTTCTATAGATAATATCGTTTCTCAGAGGGAAGGGCTTGCAGTCAGTCTGACTCGCTTTTTTAATCTCCCAATACTGTTATAGTCCCTTCACtctacacaaaaaacaaacaaacaaatgttattaaattgataaataaaattactCTGTACCAGTATAAAAAACTTGtcaattttacaaataattCTTAGTGTAATATTTTCTAGCAATTCctagtaatgtaaaatgtaaatattttgatgtacagtaaacaaaacaaatacttggTTTAATAAGTgaagttacttaaaaaaacaatgcccacaattaattgtatttaataccTGATAAATTCAAGTAATCCAGTTTCTTCAAGCAATCCTGATAGAGCAAGTACATCCAAGTACATTTgcagtaatgaaaagtaaatagtaATTCATTGTAATATGCAAGTCAATGTTTTGTTAgaagtaaaaatacaaagtcatttatttttgagagTGTACCTGATGACCCAATCCAGAAGGATGATCTAAAACTGACAAATTGAAAAAGCCTTGTAGCGTTTCTCTCCCCTATGACACCATAGGTTACCAGTTCATGAATGTGGACAAAATAATTTTCAGAACCTCACTACCTTCTCTCTAACCAAGAGAAACAGTATTACATGCATTTCAAACTAGGTGGAATGACTGAAAGACAGTAGTGGTTTGAATGTTAAAAACTtttgaaaaatcacattttgtaaatgtagtttgttacacaggtttattatttataagtattaaaagcaaatgtttaagccattttaacactatattgCAAAGTTctactttaataaaatgtcaaaatgaattGTTGGCTGCTGTTAAACCTTGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75830 lncRNA upstream 159727 7881011 ~ 7884548 (+) False AMCG00020052
TU75760 lncRNA upstream 252052 7788873 ~ 7792223 (+) True G60566
TU75591 lncRNA upstream 1089182 6952453 ~ 6955093 (+) True G60431
TU75508 lncRNA upstream 1471714 6570380 ~ 6572561 (+) True G60363
TU75499 lncRNA upstream 1560280 6482834 ~ 6483995 (+) True G60354
TU75850 lncRNA downstream 7651 8054468 ~ 8056105 (+) True G60633
TU75960 lncRNA downstream 754352 8801169 ~ 8801578 (+) True G60719
TU75970 lncRNA downstream 760185 8807002 ~ 8809869 (+) True G60729
TU75996 lncRNA downstream 839370 8886187 ~ 8886456 (+) True G60753
TU76100 lncRNA downstream 1202783 9249600 ~ 9249814 (+) True G60836
AMCG00020052 mRNA upstream 160898 7866600 ~ 7883377 (+) True AMCG00020052
AMCG00020048 mRNA upstream 178338 7858724 ~ 7865937 (+) True AMCG00020048
AMCG00020049 mRNA upstream 185743 7856838 ~ 7858532 (+) True AMCG00020049
AMCG00020046 mRNA upstream 189898 7846888 ~ 7854377 (+) True AMCG00020046
AMCG00020045 mRNA upstream 199645 7830898 ~ 7844630 (+) True AMCG00020045
AMCG00020056 mRNA downstream 28365 8075182 ~ 8086290 (+) True AMCG00020056
AMCG00020060 mRNA downstream 402975 8449792 ~ 8451164 (+) True AMCG00020060
AMCG00020059 mRNA downstream 428811 8475628 ~ 8532226 (+) True AMCG00020059
AMCG00020063 mRNA downstream 553986 8600803 ~ 8618634 (+) True AMCG00020063
AMCG00020065 mRNA downstream 741751 8788568 ~ 8800980 (+) True AMCG00020065
TU75390 other upstream 1858191 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 2682412 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 2684910 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 3208478 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 4794213 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 1737300 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 4472947 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 4488721 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 4568975 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 5302860 13349677 ~ 13350712 (+) True G61675

Expression Profile