RNA id: AMCG00020068


Basic Information

Item Value
RNA id AMCG00020068
length 2202
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00020068
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8948462 ~ 8952021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttgaaaaacaacaagtatGGATATGAAAATGTGGTTCATTTACTTCTGTGGTCACTAGATTTACTGCACAGCAAGAACAGACATATTGATTCAAGTTGTGCAGCTATGACATATTTTTGCTACATTAATGCATGTTTTGTCTATTTTGCCTTAGGTTTGGAGGCTGACCTTGAGAAGAAACTGTTTGGGCAGCATGTGGCTTCTAAGGTGATTCTTAAAGCAGTGACTGACTTCATGGAGATCAAAAACCCTACGAAGCCACTTGTCCTTTCTCTCCATGGGTGGACAGGAACGGGCAAGACCTTCATCAGCCAACTAATAGCTAAAAACATCTACAGGAATGGGATGAAGAGCAGCTTTGTGCACATGTTTGTGACCACTAATCACTTTCCTCACCCTGTTGAAGATCAAACCTATATCGCACAGTTGCAGCAGTGGATTCGAGGGAATGTGTCCAGTTGCCCTCAATCTATGTTTATATTTGATGAAATAGATAAAATGTATCCTAGACTTATGGACAGCATAAAGCCATTCTTGAATGATGTCTCCTATCACCGAGCTATTTTCATCTTTCTGAGCAATGCAGGTGGAAAGGAAATCAATGACGTGACCCTGAGATTATTGGAAGAAGGCAAAGAGAGAACAGACATTCAGCTGAGAGACCTGATGACATCATTGACCCACAATCTCTCAAAAAACGAGAAAAGTGGATTTTGGCACTCCAGCCTAACTGGTAATAACCTGGTGGACTTTTACATTCCCTTCCTGCCCCTGGAGCATAAAcatgtgcgcatgtgtgtgttaGCCGAGATGGAGGCCCGCAAATTGAAGCTTGATGAGAAACTCGCTAACGACATTGCCAATAAGTTGAACTATTTcccagagaaagagaggatgTTCTCTGTCACGGGATGCAAAGCTATTGGTGCAAAACTAATTTATTACACATAGGGATTCTGGAGGAGGAAatggcaggggtggggggggaaagcCTTCCAGAGGCCTTGCATCTTAAACTGTCAAAGCAGGAGAATTCAGTTGTGATAGTACAGGAGAGCACATGGTGGCCCTGTTTAATAACTCTTGATTTGATTGAAACTCTTTGCTCTCTTGTCCTACTATAAATGCATCAACCTTTTGtacacctttttatttttttttgctattcACGATAAGATTTATTCCCaagatttgttttccccaaTTTTGTCTGCAAAAGAATAGCAATTTATGCAACATTGTAAATCGCTGAAACTGGAAGTGGGTTTTGGAAGGCTTTATCAATTCAACTCTGTCATGCATGTGACTTGAACAGTGATCTTGTGGAAATAATCTGTATTAATAGGCTGAGATATGAAAGGATTATCCAGTGTAGTCATGTTAATTggtcatttaatttgtaatggcCAAAAAGGAATTCATATTTGATGTCTGTTCAGGAAATATCATATCACTATGCTGTCTTCCAAAATCTTTCTTCTGTTCCCACACAAAACCAATTAATGAAGTAAACTCAAACAAAGGTCACTTCTGATCATCTACATACATTACAGAAGGTTTTGTAGAGCTCTTTAgtttgatgtgttttgttttttaactggaaGGAAGATTccaaatttaacaaaaacaggCCGGTGAAGATTCTCAGTAGCACAGAAAGGCTTTTTTATAGAGCACAATAACAACTTAATGAGACTGTGGGCCATATTCACAAAACATACTGCTGCACCATTAAAACTTGTTTTCCTACTGAGGAAAGAAATGAGTCACTTGGATACTTGAAGTGCTCTTTTAAGTTAacataagcaaattaaattaatatggcCCTGCAAGTATAATCCTAGTCCTGTGAGAATtactagtattgatcagcaactatatttaacttttacaaaTTTGTTAATTTAGGCTAATATAGGGCATGTGTGCATCTGCCTTTTTTCctgtgtcttgagaagtctgtagcagactCAGTTCtcaaatcatttgtttttccgTACCTTCCCACTTTCAGGGCATGAGGTAAACATGGTTACATTGCTAACAAACCTTTAGGTCACACAAGTGGTCAGGCGGAATTGTACCAAAGGTTATGACATATCGACTCTGGCTATATTTTTGATGTggccaatataatctgttagacTTGCATGTTAATTAGCATTTAATGCATATTCTTCAAATCATTCCCATGTATTA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75996 lncRNA upstream 62006 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 138593 8807002 ~ 8809869 (+) True G60729
TU75960 lncRNA upstream 146884 8801169 ~ 8801578 (+) True G60719
TU75850 lncRNA upstream 892357 8054468 ~ 8056105 (+) True G60633
TU75848 lncRNA upstream 901645 8044275 ~ 8046817 (+) True AMCG00020053
TU76100 lncRNA downstream 297579 9249600 ~ 9249814 (+) True G60836
TU76168 lncRNA downstream 455636 9407657 ~ 9408017 (+) True G60886
TU76170 lncRNA downstream 471316 9423337 ~ 9423559 (+) True G60888
TU76395 lncRNA downstream 1325445 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 1528513 10480534 ~ 10499462 (+) False AMCG00020122
AMCG00020069 mRNA upstream 27910 8914198 ~ 8920552 (+) True AMCG00020069
AMCG00020070 mRNA upstream 93774 8839761 ~ 8854688 (+) True AMCG00020070
AMCG00020064 mRNA upstream 143039 8803438 ~ 8805423 (+) True AMCG00020064
AMCG00020065 mRNA upstream 147482 8788568 ~ 8800980 (+) True AMCG00020065
AMCG00020063 mRNA upstream 329828 8600803 ~ 8618634 (+) True AMCG00020063
AMCG00020072 mRNA downstream 39972 8991993 ~ 9000002 (+) True AMCG00020072
AMCG00020073 mRNA downstream 65321 9017342 ~ 9017787 (+) True AMCG00020073
AMCG00020071 mRNA downstream 65788 9017809 ~ 9019179 (+) True AMCG00020071
AMCG00020076 mRNA downstream 163636 9115657 ~ 9118744 (+) True AMCG00020076
AMCG00020074 mRNA downstream 178661 9130682 ~ 9137750 (+) True AMCG00020074
TU75390 other upstream 2762378 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 3586599 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 3589097 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4112665 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 5698400 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 832096 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 3567743 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 3583517 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 3663771 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 4397656 13349677 ~ 13350712 (+) True G61675

Expression Profile