RNA id: AMCG00020074


Basic Information

Item Value
RNA id AMCG00020074
length 3147
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00020074
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9130682 ~ 9137750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGAGGGTGTCAGCACTCAGACACAGAGTCTGTCAGCTCAGAGCGTCAAAGCGCAGCGCAGACACCCGACTGGGAGGCATGGGGGACGAAAGAACACCTCTCCTCGGAGATGCCCATGGGCTTATGTATACCAGcaATGCAAAGTTGTTCCTTGCAGTATTCTCAGCTGTTCTGGGGAACTTTAATTTTGGGTTTTCCATGGTGTACCCCTCTTCTGCGATCCCTCAACTGAAGAACATCGAAGACCCTCGCCTGAGAATGGACACTGACATGGTTTCTTGGTTCGGGTCTGTGTTCACACTAGGGGCTGCAGCAGGAGGCCTCAGTGCCATGGTGCTGAATGACAAGATAGGCCGGAAGCTGTGCATCATGATGTCAGGTGTGCCCTCAGCCGTGGGCTACCTGGTGATGGGCAGTGCCCAGGCTACTTGGATGCTGTTGCTTGGTCGCTTTCTCACTGGCATTGCCGGGGGAATGACGGCTGCTTCCATTCCAATTTACGTGTCTGAGATTTCCCATCCTCGGGTGCGCGGCATTTTGGGATCGTGTCCGCAGGTCACAGCTGTAGTGGGGACCCTCTCCCTCTACGCTTTAGGGCTGGTGCTGCCGTGGCGCTGGCTGGCAGTGGCCGGAGAGGTGCCCACCTTGATCATGCTGATCCTCCTGTGCTTCATGCCAGACTCCCCCCGGTACCTCATCGCAAAGGGCAGGAAGGATAAAGCCCTTCAGTCTCTAGCTTGGCTTCGGGGCTCAGGAGCAAACTACATGACTGAATTCAACAAAATTGAGCAGAGTGTCGCCACCCAGggCAAAATCTCCTTTTTAGAGCTGAGGACACCTTTCTATTATAAACCCATCTTAATCGCAGTGGGAATGAGGTTTCTGCAGCAGATGACCGGGATCACCCCCATCCTAGTCTACCTGGAACCCATCTTCAACATGACCAAAGTCATCCTGCCAGGGCAGTACGATGCAGCCATTGTGGGGGCGGTGCGCTTGGTGTCAGTGCTGATTGCTGCCAGCCTTATGGACAAGGCGGGCAGAAAGGCCCTCCTCTATATCTCAGGGTTCCTGATGTTCCTCTCCACTCTGACCATGTGTCTATACACTCACACCAACCCCCTCCCCATCCACTACATCAACATCTCCGTCACATCGGACTTCATCGCCCGGCAGCCTGAGACTCTCCTGCAGGccgcccccccctccctcaTCACTCTTATTCCACTCATTAGCACTATGCTCATTATATTCGGTTACGCTATGGGCTGGGGTCCCATAACCTGGCTGCTCATGTCTGAGATCTTGCCCCTGGGTGCCCGGGGAGTGGCATCCGGCCTGTGCGTAGGAGTCAGCTGGGTCACAGCCTTTGCCTTGACGCAGCTCTTCATGAAAGTTGTGGATGCCTATGGACTATTCGTGCCCTTCCTATTCTTtagtgtggtgtgtgtggtcAACATTATCTTCACTGCAGTGTGTGTCCCCGAAACCAAAGGGCACTCTCTGGAAGACATCGAGAACTACTTTCGCTTTGGACGCGTCCGCAGCATTAACACAACGTGATGCGGATTGCTATTGGACCTAGAATTGCTCAGGGATCTAAAGGAATGGAGGGCACTATACCATCAGACACCTCTCAGTACTTGGACAGCAGCAAGCAATTTTGAAGCTATAATTCATCTCAAAAAGGGGAGTTTGAGAAGGCTATGCACTTTAACATCATATCACTACTCTACTGTCCAGCAGCTCAAGCCAAAGGACATTTTTACAGCTGCTTCCTACTCCAATACAGGCAGGGTGTGCCGATACATATGGGGTCAGAAGAGTGAATGCAATGACACACCCCACTCATTCCTAAGTAAATTacttcaacatttttatttttagaaagtgTTTGATGAATGTCCAGAGAGCCGGCCTTAGTCCACTATACTCTTCTGTACATTCaaagttagtgtgtgtgtgtcaagggGTTAAGTTATACAGGAAAATGCACATTACTTGCACATATTACTGCCTTTGACATGTATGCAGaccacaatacattaaataaaacatttgtgtatctttttaaatcagatgcaaatgcaaaatttaatcttaaatgaaatgtatttcttacagaggacaggaaaaaaaaaaatcaaatttgttaaaatatctgttaaaataaacaagcaacaCTGCCTTCTGAGTTTTAATTAGTACACACACAAGTTCCATGCAGCTTCcatggaggagaaaaaaatactttccggattttatggatttaatttattatcacCACCATACAGGACaacaatgtaaaagttaaaGTAAATGCAATTTCAAGTTCAAGAttccccaaaaaaaaaaaaatcctttttttttctgcattgaagCAATTGCGCCCCCTCTACAGCAGCTACtgcactgaaatgcatttgaatggGACACCAAGGGTGCAATCCGGCCTCATACAGGCAGAGTAACTTCTCATGCTGAAGTGCATTTAAAAGAGGACGTTTTTGAAATTCAGCTCTCAAAGGCAGCTGCTAATGTGCCTTGAATTCTCAGATTAAGATGGAGGGATAACCTGATAGTGCTCTCCTTCTTAAATCGGTGCTTCACAGCAACCAATCAGAtctccaaaatgtaaaatagcgTCCCATCAGAGTAGAACGCATCAGTAACTTAACCCACTTCAGCAAAGCATACATCCACATAAACTGACGGTGATGCAAGTTTtgcttgatttttttatatatatatgaacaaatgtctgcttaaacacatttcatattATTCTTACAAAAACAGTGATCTAACCATGGATTTATGCAATATATCCTTGCAATTTACGTGGAAACAACTGACTAATACAAGTTACATTCCTCAGCTTCTTACAGTTCCTCCACAAGGCTCTGATGTTACAAACAATATCTCCATGGGCTTTTTCCTCATTCgattttgcattaattaagaTCTTTGGAATTCAACTTCAAGTACTAACAACAGGGAAAGATGAAGGTTCATTATGGTTAACCTTTTTATTACAAAGCAGATTTCCAGAATAGATAATGCAAAGATCAATAGTATTGCTACCTTCTTTGTGTGTAAAACCACTCAAGAAAGTCAGtagtctgcaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08144 SLC2A6, GLUT6; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75996 lncRNA upstream 244226 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 320813 8807002 ~ 8809869 (+) True G60729
TU75960 lncRNA upstream 329104 8801169 ~ 8801578 (+) True G60719
TU75850 lncRNA upstream 1074577 8054468 ~ 8056105 (+) True G60633
TU75848 lncRNA upstream 1083865 8044275 ~ 8046817 (+) True AMCG00020053
TU76100 lncRNA downstream 111850 9249600 ~ 9249814 (+) True G60836
TU76168 lncRNA downstream 269907 9407657 ~ 9408017 (+) True G60886
TU76170 lncRNA downstream 285587 9423337 ~ 9423559 (+) True G60888
TU76395 lncRNA downstream 1139716 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 1342784 10480534 ~ 10499462 (+) False AMCG00020122
AMCG00020076 mRNA upstream 11938 9115657 ~ 9118744 (+) True AMCG00020076
AMCG00020071 mRNA upstream 111503 9017809 ~ 9019179 (+) True AMCG00020071
AMCG00020073 mRNA upstream 112895 9017342 ~ 9017787 (+) True AMCG00020073
AMCG00020072 mRNA upstream 130680 8991993 ~ 9000002 (+) True AMCG00020072
AMCG00020068 mRNA upstream 178661 8948462 ~ 8952021 (+) True AMCG00020068
AMCG00020075 mRNA downstream 6801 9144551 ~ 9157714 (+) True AMCG00020075
AMCG00020086 mRNA downstream 133774 9271524 ~ 9301196 (+) True AMCG00020086
AMCG00020085 mRNA downstream 189169 9326919 ~ 9338579 (+) True AMCG00020085
AMCG00020090 mRNA downstream 211329 9349079 ~ 9384376 (+) True AMCG00020090
AMCG00020091 mRNA downstream 248323 9386073 ~ 9392923 (+) True AMCG00020091
TU75390 other upstream 2944598 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 3768819 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 3771317 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4294885 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 5880620 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 646367 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 3382014 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 3397788 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 3478042 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 4211927 13349677 ~ 13350712 (+) True G61675

Expression Profile