RNA id: AMCG00020076


Basic Information

Item Value
RNA id AMCG00020076
length 1287
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00020076
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9115657 ~ 9118744 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAAAGCAAAGCCCAAGTGTCCCGACCCCCCCACCGTAACCGCGACGCCAGGATCTACATCCGCACAACAGAAGAACAaaagcccccccaaaaaaaagaagttGTGGAAAACTGCGGGAAAGGGGGCTTCAAAGAAAGATGAAGGAGAGCGCAAGAAGAGCGCCGTGCTGCCTCCCAAAGAAGCTCAGCAGTTTTCAGCCAACTGGAAAGCACTGCAGGAGTTGCTCTACCCAAAGAAGGAAGTCAAAAGCCAGGCAAATGAATCTGCTGGGACAAATCAGAACTCCAAGAAGGAGAAAAATCTGAAGAAGCACCCTAAAGACATTCCAGTGAAAGATCAGACTGTGAAGGCTGTCCAGGTGCCCACTGGGAAGCCAACTAAAGACGGCACACCGCCGGGCACCTCAGATCAGAATGGCACTGGAGTTGTTGAGCAACAGAAGactaaggaaaagaaaaagaggaaaaatagCCAGTTACCTGTGGAGGGGAAAGAAGAGGGCAGTAAAAAGAGGAAAACTGAGCCGGCTGTGGGGAGCAGACCAACTGAGGAGGATATTTGGTTCGATGACGTGGACCCCGACGACGTAGAGGCTACAGTAGGGATAGATGCGGCCAATATTATGCGGAAGAGGCAGGGAGTGGCAAAGATAGAGTTCCTGACGACAGAAAATGCGCTGGTGAAAGAGCATGGCTTTGAAGGGTTAACCAAAGCAGTAGCCATGGATTGCGAGATGGTTGGGGTTGGTTATAAGGGTGAAGACAGCATTGTTGCCCGAGTCTCCATCGTGAACCAGTTCGGAAAATGCATTTATGACAAATACGTCAAGCCCACGGAGAAAGTGACCGATTACAGGACAGCAGTCAGTGGGATCAGACCACAGGACATCAAGAATGGAGCGAATGTGAAGGTCGTTCAGAGAGAGGTGGCCAATATCATACAAGGGAGAATTTTAGTTGGACATGCCATACATAATGACCTCAAGatctTGCTTCTAGATCATCCAAAGAGAAAAATCAGGGATACTCAGAAATATAAACCCTTCAAACAAATAGTCAAGTGTGGTCGGCCCTCACTTAAACACCTCTGTGAGAAGATTCTTCATGTGAAAGTCCAGCAGACTGAACACTCATCGGTCCAAGATGCTCAAGCCACGATGAGGCTCTACACTTCAGTGAAACAGCAATGGGAAGCAGAGATCAAAGACAGGCATAAAAGCAAAGACTCATCCAAGAAAGAGAGCAAACCAAAACCAAGGGATGAGAGAACCTCTACGGACTGA

Function

GO: NA

KEGG:

id description
K18327 REXO4, REX4; RNA exonuclease 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75996 lncRNA upstream 229201 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 305788 8807002 ~ 8809869 (+) True G60729
TU75960 lncRNA upstream 314079 8801169 ~ 8801578 (+) True G60719
TU75850 lncRNA upstream 1059552 8054468 ~ 8056105 (+) True G60633
TU75848 lncRNA upstream 1068840 8044275 ~ 8046817 (+) True AMCG00020053
TU76100 lncRNA downstream 130856 9249600 ~ 9249814 (+) True G60836
TU76168 lncRNA downstream 288913 9407657 ~ 9408017 (+) True G60886
TU76170 lncRNA downstream 304593 9423337 ~ 9423559 (+) True G60888
TU76395 lncRNA downstream 1158722 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 1361790 10480534 ~ 10499462 (+) False AMCG00020122
AMCG00020071 mRNA upstream 96478 9017809 ~ 9019179 (+) True AMCG00020071
AMCG00020073 mRNA upstream 97870 9017342 ~ 9017787 (+) True AMCG00020073
AMCG00020072 mRNA upstream 115655 8991993 ~ 9000002 (+) True AMCG00020072
AMCG00020068 mRNA upstream 163636 8948462 ~ 8952021 (+) True AMCG00020068
AMCG00020069 mRNA upstream 195105 8914198 ~ 8920552 (+) True AMCG00020069
AMCG00020074 mRNA downstream 11938 9130682 ~ 9137750 (+) True AMCG00020074
AMCG00020075 mRNA downstream 25807 9144551 ~ 9157714 (+) True AMCG00020075
AMCG00020086 mRNA downstream 152780 9271524 ~ 9301196 (+) True AMCG00020086
AMCG00020085 mRNA downstream 208175 9326919 ~ 9338579 (+) True AMCG00020085
AMCG00020090 mRNA downstream 230335 9349079 ~ 9384376 (+) True AMCG00020090
TU75390 other upstream 2929573 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 3753794 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 3756292 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4279860 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 5865595 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 665373 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 3401020 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 3416794 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 3497048 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 4230933 13349677 ~ 13350712 (+) True G61675

Expression Profile