RNA id: AMCG00020091


Basic Information

Item Value
RNA id AMCG00020091
length 3024
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00020091
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9386073 ~ 9392923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCTCCTGGCCTATCATCAATAGTTTTCCTAGTGAAGGACGTTGGAGTCATTAACGCATCAGCCTTTGCCAGTGACAATCTAGGCTTTGTGTCTAGTGTGTCTATGGCTAATGCTGGCATTGCTCAAATTGAATCTGGGGCTTTTAAATCCTTCAATCAGCTGAAGAAACTCAGCTTGTACCGTAATAAACTCACCCAAATCAGCAGCGTCTGGCTGTCTAGGCCGGAGGCCCTGGACAACCTGACCATGTTTGAAAACAACATTCAGAAAATCGACGGAAAAACGTTGTCTCCCTTCTCAAATCTGCAAGTCCTTAACCTGGCAAGAAACCAAATTAATGCAATTGCACGGGACAGCTTTCAAGGACTGGACAAACTTGTCTTCCTGGACCTGTCAGGAAACAGACTGTCATATGTGGACAGGGATGCGTTTCTCCCTTTGCCATTCACCATGATCAGACTGGATGGCAATCCGTGGGATTGTTCATGTAAAGTAAAggattttgcacattttctcaGAGGCATGCCTGTGTGGAACATGTCGGAGCTGAACTGCTCGGCCCCCAGCACGGCCCCGAGCACGGCCCCCAGCACACCTCTGCCGCCCATAGATGCACTGGTTCATATAGGAGTACCTGCTGTCATCAGTTTCCTGGtcattCTCTGTATCCTGCTCTGCATCGTTCTTATGTACAAAAGGaagcaagagaaaaaacaagtgAATCCGGACAGAGAGGGACTAGAAGAGCGCAACTTTCCTAGGACAGAAGGAACGACAGCAAAGGCTGGACAGGAGGCTGCCACTGTCCTGCAAGGGAGGCTAGAGGAAGTGAGTTGTGGTACAGGTATTTCCAAGAACAGCGTCATGAAGGGCAGGGCCAAATCCGCCTCTGCTGTTCTCTCCATATGTGAGTTCACACAGCACAGTTACAGGGGGGAGGGGATGAAACTCGAAAACATGGCCCTCTCTCAACCTCAGGGCGATAACTTTACAGATCAGAGTCCcggaaagcaaataaaaatcattGAAAGTGGCATGATTAAAGAGGGGGCCGTTGTGTCAGTGTTTGGTTTCAAAGCCTTCCCACTCACCATTGCTCAGTACACTGGTGAACACTATGTAGACTATCAGACCAAAGAAACCAAAGGGAACTCAAGCGCTACGGTGGAAAAGGCATACATGTGTGAGTCTGCCAGTGACACGAGACAGATTTCTGAAGGAGCTGAGAACTTACCTTACCTTAGCATTGACACTAAACCAGCCAAACAGACCATGGAAACCACAGCTCAATGCCACCCAATTCCCAAAAAGAGCCAGGGACTCAGCCGCACTATCAAAAGGATGTCGACCTGGCCACCCACAAAGACTGAGTGGAAGCAACACCAAGTGGACACACATGATATCCAGAAAATAGCCCTGCAGCAGGGGGACTCCTCTCATGTGTGCCAGAAGGTGGATTTCTTATTCGGAGACAACTCTCAGAGCAAACTCCAAGTGCACCCTGAACCAGAGAACGTGGGTTTCTTCAGAGATAACTCTCAGAGCAAACTCAAAGGAAACCATGACTGTGAGTCTGCGCCACAGACTGATGGACTAGATGGGACCAGCGTGGATAATCCCGATGGGAAATGCTCGTCTATAAGTGAGGAAACGTCCAAAGGAGGGGAAAGGCCTCGGCGGTTTACGATTGAAGACACGGCCAAAGTGAATCATGGGAAAAAAAGAGCCGGCTCCCAAACTGCAGGCGAGAAGAAAAGAACCCGGCTTAAGCAGAGCGCCGCCCTCTACCCCCGGGccaaagaggaggagaagaaggatgACTTGCAGGCTGCTTGTGTGAGTAGCTACCCGGGGGATGCAAACCTGCTTCAAGAAGTCGTGGAGAATCAGGGCAGGTTCGCTGTATGCTTGTTTGCAGAGGTGCTGATGATTCTTGCCCTGCTGATGCCCCCCTGTAGCCTGGCACAGCTCTGTCCCACAAACTGCAAGTTCTGTTCGACTGGCCTGGCAGACTGCGAGGACATTTCCTCTCTGGTGCTTGGGATCCCCACCTCTATTGATAAGATCTTACTTCGTGGAGGACCTGTAACCCACTTCCCAGCAGGAGCGTTCAGGAACTTTTCCCACCTCAAAGTGTTATCCATCAACAACTTCCCCATTTCCACTATGATGAACTACTCGTTTGACCTGGGACAAAGCAACCACTTAAAAGAACTGGACCTCAGCAAGAACCGACTCACCAGCTGTGGAATAGAAGCTGCCAGCTTTGCAGATCTCATGAACCTTACATCTTTCACCTTGTCTAACAATGCGCTCAATACCTTGAGAAAACCCTGGTTTCAATCCATGGTGAGTCTTGAGAATCTTCAATTGGAAAACAATGGAATTACCTACCTGCAACCAAGACTTTTTGAAAACTTGCTTCATCTCAAGAAACTGAACTTGAGCTCCAATCTCATCAGCTACGTGTCCACTGATACATTCTTCGGTTTGAGAAATTTGATTGAACTGGACTTGGCTGATAATAAGGTGATGTCAATCAGTGATGACGCCTTCAGCCCCTTAAGAAACATTGAAGGCATTGCTTTGTTTCACAACAATTTAAAAGTACTGCCCACCCTGCCAGCGTCCACAAGTACATTGCAACTCCATAGCAACCCCTGGCTGTGCAGCTGTGTGCTGCACTGCAGACAAGGCAGTGTCACTGACCCACTGAGCGATAGGAAGGAGGGGGACGGCAGTGCATGTAGGGGACAGGCAGCAGTCCTGCAGGAGACATACGCTGCTGTGGCAGCTCTGACCCACATGCCTCCCTCTGCTGCACACGGCTACACACGGGACACTGGGCTCCAGGCACAAACTGAGCTTGACTGCCTTGGTGGAGAGAAGGAAGAGCAAAGCACAGGAAGGGAAGATCAGATTCGCTTATGTAGGACAGCTCCAGGCTTTCTTACAGCGGTTGATGAACTCCATCAAGTGACAAGTGGAGAAGAGATGTCCAATGCTGAAACATCTGTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76100 lncRNA upstream 136259 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 499617 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 576204 8807002 ~ 8809869 (+) True G60729
TU75960 lncRNA upstream 584495 8801169 ~ 8801578 (+) True G60719
TU75850 lncRNA upstream 1329968 8054468 ~ 8056105 (+) True G60633
TU76168 lncRNA downstream 14734 9407657 ~ 9408017 (+) True G60886
TU76170 lncRNA downstream 30414 9423337 ~ 9423559 (+) True G60888
TU76395 lncRNA downstream 884543 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 1087611 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 1113476 10506399 ~ 10507213 (+) True G61095
AMCG00020090 mRNA upstream 1697 9349079 ~ 9384376 (+) True AMCG00020090
AMCG00020085 mRNA upstream 47494 9326919 ~ 9338579 (+) True AMCG00020085
AMCG00020086 mRNA upstream 84877 9271524 ~ 9301196 (+) True AMCG00020086
AMCG00020075 mRNA upstream 228359 9144551 ~ 9157714 (+) True AMCG00020075
AMCG00020074 mRNA upstream 248323 9130682 ~ 9137750 (+) True AMCG00020074
AMCG00020089 mRNA downstream 133428 9526351 ~ 9527538 (+) True AMCG00020089
AMCG00020092 mRNA downstream 143191 9536114 ~ 9542291 (+) True AMCG00020092
AMCG00020095 mRNA downstream 232166 9625089 ~ 9625634 (+) True AMCG00020095
AMCG00020099 mRNA downstream 298315 9691238 ~ 9732050 (+) True AMCG00020099
AMCG00020104 mRNA downstream 348834 9741757 ~ 9779949 (+) True AMCG00020104
TU75390 other upstream 3199989 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4024210 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4026708 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4550276 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 6136011 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 391194 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 3126841 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 3142615 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 3222869 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3956754 13349677 ~ 13350712 (+) True G61675

Expression Profile