RNA id: AMCG00020092


Basic Information

Item Value
RNA id AMCG00020092
length 1695
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00020092
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9536114 ~ 9542291 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAAAAAGAAACCGTGCAGAACATGTTTCGAGACCGAGGGCACACCAACGAAGCATACCTGCCTACCATTAGTGAGAAGAGATCTCCGCTGTATCAGACGTCCAGCTACATCATCAGCCATTCGTACCCCTACCTCAGCAGAGGGATTCACAGTTTTGTATCCTCTGTTATGTCACAGAGATTGCTGGAATATAAAAGCAATCAGACTGCCAACCTGGGACATAAACTACACAAAAGTGTGACCTCATCCAAGCCATCCAATGTCACCATAACAATGACTTACCTTGGGCAAGGTCTTTCTACACAATCCAAGGATGAGATGAAAGTGTTCCAACAGATTTGCGGGGGAGAGAATCTCTGTGTTTTTAAGGGATACTTACGTCCAGGAGAGCAATTCCAATTTGTTTCCAAAAGACATCATGGCTACCCTTTCAGCGCCACGCTCTTCATTAATGGTATCATGGCTACGAGGATCAGCTCCTGCTGCGAGTACAGGTACACCATCGGCCTCCAGCAGGGCCGGCACAGCTGCTTCAGACTGGCCAATCTCAATGGAGGGCAGCCTTGTTATAGATGTGTAGGAATGCAAAACATGAACAGCAGGAAGAACAAATTGAGAGTTGAAGAGGACCGCCTTTTTTACAACGCATCGGAGAAGAGGTTAGAAAAAGATGAAAAAGAATCATGTTCCTCTTCACCTCTATTTATCCCGATAAGAAGCAGCATCAGGCAGGACAGGCCTCCACTGATGCAGCACAGACGGCTTCCTCACAAAGTCATAAACGCATCAACGGACAGTGAAGGTTTGCAAACCTCTGTGAAAACGGTCAACAGCCTGAGGCCAAAGAGAGGGTCACCCCCTCAAACAGGAGATTTGCTGAGTTCAGAGGAAACGATCGACACCGTTGCGGATATGGTTGCAGTGTTAGAGGCCTGCGATTTAGTGGAACAACTAGTTCTGAGAAACACGGGCCTGAATGATGAATTACTTGGGTGTCTTGTAACAGCACTTATGAACAGTCCATCCGAAGTCAAGATGATCAATCTCAACCTGAACAGCATTGGACCCCAGGGAGCTCAATGTCTCCTTGACCTGCTAAAGATCAAACCGCAAGTCAGAGGGCTTTTATTATTTGGAAACAATCTGGGAGACACGGGCATTGTAAAATTACTGTCAGGCCTTGCAGAACTGCAGACACCACAGGACCGAGAGCAAATGACAACTAGGTCACAGGAGGCAGAAGACAGACAGAACCTCACCTTGTTGGAACTGGACATCGGTGGGAATCAGATGACCAGTGAAGGGCTGGGGGTCGTGGCCTCTTTTCTCAGGCAATGTCCTCTGCTGCAGTACTTGGGTCTCGCCAAAAGCAATGTTGCGGATACTGCAGGGTGGGCAGACTTATTTGACAGCTTAAAGACCAAAACATCCATTGGCCACATAATCCTAGATGAAAACTACCTGGGAGATGAGGGAGCAAAGCTGTTTGCAGAGATGTTAAAGTTGAACGCTAGCCTGTGCAAGGTAGATCTGGACAGTAATGGTATAGGAGACGATGGTGGCAACGCCATATTCGAAGCTTTACTCAGTAGAACAGGAGGCCCTCTGGAACATCTGAGTTTAGAAGGGAACTTCATTAGTGATAATCTCTTGACCAGAATACATGAGCAGCTAAAACCTAATcctacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76170 lncRNA upstream 112555 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 128097 9407657 ~ 9408017 (+) True G60886
TU76100 lncRNA upstream 286300 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 649658 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 726245 8807002 ~ 8809869 (+) True G60729
TU76395 lncRNA downstream 735175 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 938243 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 964108 10506399 ~ 10507213 (+) True G61095
TU76513 lncRNA downstream 1206253 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 1239475 10781766 ~ 10783898 (+) True G61153
AMCG00020089 mRNA upstream 8576 9526351 ~ 9527538 (+) True AMCG00020089
AMCG00020091 mRNA upstream 143191 9386073 ~ 9392923 (+) True AMCG00020091
AMCG00020090 mRNA upstream 151738 9349079 ~ 9384376 (+) True AMCG00020090
AMCG00020085 mRNA upstream 197535 9326919 ~ 9338579 (+) True AMCG00020085
AMCG00020086 mRNA upstream 234918 9271524 ~ 9301196 (+) True AMCG00020086
AMCG00020095 mRNA downstream 82798 9625089 ~ 9625634 (+) True AMCG00020095
AMCG00020099 mRNA downstream 148947 9691238 ~ 9732050 (+) True AMCG00020099
AMCG00020104 mRNA downstream 199466 9741757 ~ 9779949 (+) True AMCG00020104
AMCG00020105 mRNA downstream 242275 9784566 ~ 9788033 (+) False AMCG00020105
AMCG00020101 mRNA downstream 267699 9809990 ~ 9815939 (+) True AMCG00020101
TU75390 other upstream 3350030 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4174251 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4176749 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4700317 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 6286052 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 241826 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 2977473 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2993247 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 3073501 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3807386 13349677 ~ 13350712 (+) True G61675

Expression Profile