RNA id: AMCG00020101


Basic Information

Item Value
RNA id AMCG00020101
length 1934
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00020101
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9809990 ~ 9815939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGTGTTCTTGTCTCGTCCCGTGGACAGCGTGTCCCTGCTGGGCAGACCGCTCGTGGTGCCCTGCTCTGTGTATGACACTCAGACCCACCAGCAGCTGCCTGTGCACTGGCTGAAGGACACAGGAGATCTGGACACCTGGGTTCACCAGCTGGCCAATGGGTCACTGTTCTTCCCCAGCCTGCGGGAGGAAGACCTCGGCACCTACACCTGCCAGGCCAGCGATGGGCTGTCTCTTATCAATGCTACTGTCAGCATTTCCAAGGCCTATCTGGATGGTATGTTCCACAGTCCCATGTCTCAGACAGTGAGGGCAGGAGACAGCGTGTTCTTCCAGTGTGTTTCTGGAGACAGTCTACCTCCCGCACAGATCAGCTGGCAGAAGGAGGGGCAGCTCTTTACCAAGGGAGGGCAGATTCAGGGTGAATATGGAGGaggaaattataaaaaaatatctggcACGTTACATATTCCCGCCGTGTCCAAGGAAGACGAAggaaaatatgtgtgtgtgacatatAACAGTGTACTGGGAGTACATCTGTACAGTGAGCCAGCATCTCTCACAGTGGAAGTGCTGCCGTCCAGACTGGTGATATCTCAGGGTCCCGAGAACCTCACTGTCCCGTTGGAAACAGAGGCAGTTCTGCACTGTTCTGTCCAGGGGTTCCCTTTCCCCGTGGTGCAGTGGTATAAAAACAACCAGCCCCTGGAGAACAGGACACATCTGAGATTGGAGGACCAAGGGCAGCTACTCGTCTTCAAAAACGTGTCTGTGGAAGATGAGGGCTCCTACTATTGCGAAGCCCAGAACGGAGTGGACACAGTGACATCCCAAGCTGCATACCTGCTTCCTGCTGTCATGGGCTGGGGCTTTGGTCAGCAACCCACCAATGTGACAGCGAGAAGGGGAAGCTCCATTACTCTGACCTGCAGGCCTCCGCACAGTAGGCCTCCTGCCAGCATCACCTGGTTCAAGAACAATAGGGTGCTTAACAAGATGCCACACTTTATGTTCCAGGAGAGTGGAGACTTGTTTTTTCAGAGAGTCCAGGAAACAGACAGAGGAATCTACTTTTGCAGAGCATCCAATCCCTATGTGTTTAGGGCTGTGTCTTCTGTAAAAGTCCATCTAAATGTGTTAGTCCCCCCAAACATCACCATATCACCTGAAACGATGACAGCCACACTGGGGTCCAGAGTGTTTTTCCAGTGTCAGGCCTCTGGCAGTCCCTCACCCTCCATCGTTTGGTACAAACAAGGCCAAACCATCAAGACAGGGGGGAAGATAACAGTCGGGTCTCAAAACATCACTCTGTACATCTCTGCGGTGCGGGCCTACGATGAGGGCACATACACCTGTGAGGCCACCAATGCCCTGGGGCAATCCCGCTTGTCAGCAACGCTGCGAGTGGCAGGTGACAGTAATCTCTTCCCGTGTTCcttcacagaataaaaaaaacgaGTGTGCAGTTTTTACTTTGAGAGCTGTTTTCTGTGAACACAAAGTGCTATTCCTTATTCTAGCTGCAAGGGGTCAATAGCCACAGTAATACTGCAGCGTGACTGTCCTGGTTACTGTTCCAGAGAGGTTGAGACAGGTAGTTGTCAGATAGTGCCTCTGCTATATGTCCAAGGCATTTTGGCAAGATCTCTTTCGTTGGCACAATGTGCGTTATTTAAGGGGCACTTAAAAAATTCAGGCAGGATTTAAATTAAGTGAAACATCTTTATTGTAGGATCCAAGCCCTCCaagtattatgtaaaatgttatgaatGTCAGGATGTAGAAACAAAAGAGGAACAAGACCCGAACGCTTTTGTGTACCACACTGCTCTCTCACATTATACTTAACATCTCCTGAAGTACAATTTAGGGGTTTCCATGACATTTTAGTGGAAGAACAACTGTAATCAGAAAAGGACATaacc

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76170 lncRNA upstream 386431 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 401973 9407657 ~ 9408017 (+) True G60886
TU76100 lncRNA upstream 560176 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 923534 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 1000121 8807002 ~ 8809869 (+) True G60729
TU76395 lncRNA downstream 461527 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 664595 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 690460 10506399 ~ 10507213 (+) True G61095
TU76513 lncRNA downstream 932605 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 965827 10781766 ~ 10783898 (+) True G61153
AMCG00020105 mRNA upstream 21957 9784566 ~ 9788033 (+) False AMCG00020105
AMCG00020104 mRNA upstream 30041 9741757 ~ 9779949 (+) True AMCG00020104
AMCG00020099 mRNA upstream 77940 9691238 ~ 9732050 (+) True AMCG00020099
AMCG00020095 mRNA upstream 184356 9625089 ~ 9625634 (+) True AMCG00020095
AMCG00020092 mRNA upstream 267699 9536114 ~ 9542291 (+) True AMCG00020092
AMCG00020102 mRNA downstream 76205 9892144 ~ 9904648 (+) True AMCG00020102
AMCG00020103 mRNA downstream 94296 9910235 ~ 9925271 (+) True AMCG00020103
AMCG00020109 mRNA downstream 127554 9943493 ~ 9947094 (+) True AMCG00020109
AMCG00020108 mRNA downstream 175691 9991630 ~ 10002494 (+) True AMCG00020108
AMCG00020110 mRNA downstream 213869 10029808 ~ 10035881 (+) True AMCG00020110
TU76237 other upstream 21938 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 3623906 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4448127 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4450625 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 4974193 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 2703825 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2719599 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 2799853 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3533738 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 4017231 13833170 ~ 13834832 (+) True G61894

Expression Profile