Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00020103 |
| length | 1259 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 9 |
| gene id | AMCG00020103 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 9910235 ~ 9925271 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K09375 | LHX6_8; LIM homeobox protein 6/8 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU76170 | lncRNA | upstream | 486676 | 9423337 ~ 9423559 (+) | True | G60888 |
| TU76168 | lncRNA | upstream | 502218 | 9407657 ~ 9408017 (+) | True | G60886 |
| TU76100 | lncRNA | upstream | 660421 | 9249600 ~ 9249814 (+) | True | G60836 |
| TU75996 | lncRNA | upstream | 1023779 | 8886187 ~ 8886456 (+) | True | G60753 |
| TU75970 | lncRNA | upstream | 1100366 | 8807002 ~ 8809869 (+) | True | G60729 |
| TU76395 | lncRNA | downstream | 352195 | 10277466 ~ 10346391 (+) | True | G61064 |
| TU76416 | lncRNA | downstream | 555263 | 10480534 ~ 10499462 (+) | False | AMCG00020122 |
| TU76442 | lncRNA | downstream | 581128 | 10506399 ~ 10507213 (+) | True | G61095 |
| TU76513 | lncRNA | downstream | 823273 | 10748544 ~ 10755375 (+) | True | AMCG00020129 |
| TU76518 | lncRNA | downstream | 856495 | 10781766 ~ 10783898 (+) | True | G61153 |
| AMCG00020102 | mRNA | upstream | 5587 | 9892144 ~ 9904648 (+) | True | AMCG00020102 |
| AMCG00020101 | mRNA | upstream | 94296 | 9809990 ~ 9815939 (+) | True | AMCG00020101 |
| AMCG00020105 | mRNA | upstream | 122202 | 9784566 ~ 9788033 (+) | False | AMCG00020105 |
| AMCG00020104 | mRNA | upstream | 130286 | 9741757 ~ 9779949 (+) | True | AMCG00020104 |
| AMCG00020099 | mRNA | upstream | 178185 | 9691238 ~ 9732050 (+) | True | AMCG00020099 |
| AMCG00020109 | mRNA | downstream | 18222 | 9943493 ~ 9947094 (+) | True | AMCG00020109 |
| AMCG00020108 | mRNA | downstream | 66359 | 9991630 ~ 10002494 (+) | True | AMCG00020108 |
| AMCG00020110 | mRNA | downstream | 104537 | 10029808 ~ 10035881 (+) | True | AMCG00020110 |
| AMCG00020111 | mRNA | downstream | 113489 | 10038760 ~ 10040058 (+) | True | AMCG00020111 |
| AMCG00020113 | mRNA | downstream | 139419 | 10064690 ~ 10086510 (+) | True | AMCG00020113 |
| TU76237 | other | upstream | 122183 | 9784117 ~ 9788052 (+) | True | AMCG00020105 |
| TU75390 | other | upstream | 3724151 | 6182712 ~ 6186084 (+) | False | AMCG00020000 |
| TU75242 | other | upstream | 4548372 | 5355772 ~ 5361863 (+) | True | G60137 |
| TU75235 | other | upstream | 4550870 | 5358464 ~ 5359365 (+) | True | G60132 |
| TU75012 | other | upstream | 5074438 | 4823813 ~ 4835797 (+) | False | AMCG00019967 |
| TU76875 | other | downstream | 2594493 | 12519764 ~ 12537752 (+) | True | AMCG00020177 |
| TU76877 | other | downstream | 2610267 | 12535538 ~ 12537752 (+) | False | AMCG00020177 |
| TU76948 | other | downstream | 2690521 | 12615792 ~ 12619817 (+) | True | G61491 |
| TU77200 | other | downstream | 3424406 | 13349677 ~ 13350712 (+) | True | G61675 |
| TU77491 | other | downstream | 3907899 | 13833170 ~ 13834832 (+) | True | G61894 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00003793 | True | 3278 | mRNA | 0.41 | 9 | NC_007121.7 | 9372702 ~ 9395220 (+) |
| grasscarp (Ctenopharyngodon idella) | CI01000304_05843719_05856695.mRNA | True | 3643 | mRNA | 0.40 | 11 | CI01000304 | 5842311 ~ 5857811 (-) |
