RNA id: AMCG00020108


Basic Information

Item Value
RNA id AMCG00020108
length 2290
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00020108
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9991630 ~ 10002494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGAGTGTGTATTCCCATCCTGCCTATAGCACACACCTTCACCTGAAGCCCCGCCCCCTGCAGTACCCACCCCTCTGCCATGACATGTACAATCGCAGCCCTTTATAAGTGGCCTCACTGCAGTGGTCAGAAGAGGCTACCATTTCCCTGAGAGATACCATTTACTTTTAACTCGCTTCTCCACATCCATTATGTCCCTGCGATCCATCAGCCATTATCCCTCCTTCTCCAGCATGTCGCTGAGAGACAGCAGCTGGAGCAGCGCCCCGGCGcccctctccttctccaccAGCTCTCTCTCCTACTCCAGCTCCGGGGGCAATGGCCTCAACAACCTGGTCCTCAATGGCAGCAAGGCAGCCAATGAGAAGGAAACCATGCAGGGCCTGAACACTCGTCTGTCCAAGTACCTGGAGAAGGTGCGCTCCCTGGAGACATCCAACGCTGAGCTGGAGCTCAAGATCAAGCAGTGGATGATCGAGAAAGCCCCCAAGAGCAGAGACATAGACGCCATGATGGCGAAGGCCCACGTCCTCAGCCAGGAGGTCAAAAAGAAGTCCTTGGAAAACACTAAAATCCTGCTGGAGATTGATAATGCCAAACTGGCCGCTGATGACTTCAGAGTAAACAAGGAGGTGGCGGCATTCCGGGATCGACTGGCCACGGACCAGGTCAGCGTGGAGGTGGATGCGATGCAGGGTCCAGACCTGGCAGCTGTGCTGTCCGAGCTGCGGGCACAGTATGAGGGCATCGCACGTAAGAACAAGGAGGATGCTGAGACCTGGTACAAGAAAAAGCTGGAGTCTGTGCAGGTGGAGGTGAAGGAGAGCAATGAAGCCCTGCGGTCGGCCCAGAGTGAGCTCAACGAGAGGCGCCGCTTCCTGCAGAACCTGGAGCTCGAGCTGGACAGCCTCCGCAAACAGGTGAACGCTCTGGAGGGCAACCTGAGTGAGACCAGCCAGAAGTACGGGCTGGAGATAGAGCGGCTGCAGGGCATTGTCAGCCAGCTGGAGGGGGAGCTCTCGCAGCTGCGGCTCGACATGCAGCGCAGCAAGACCGAGTACGAGCAGCTGCTGCGCATCAAGCAGAACCTGGAGCTAGAGATTGCCACCTACAGGCGCCTGCTGGAGGGAGAGGAAGTGGTTAAGGAAACACCTCCCCCTCCCAAACGGGAGCCCGACGTGAGGACAAGGAAAATCGTCAAGGTCGTCACTCAGACCATGATCAACGGTGAGATCGTGGATGAATCCAGCGAAGTGGAGCAGatagaggagaagaagaagtGAGCTCTGATGGTGTTCTGTTACAAACCCGGATCTAGatgtatttcactgtatttctttGTGTTAGTTGTGCAAGGTATGAAATATATAAGTTGTTCTTCTTCAGTGTGTGTGATCATGGAAGGGCTATATTATGGTTAAAAAAGTAAgctatattttttctgttgtttttttttccactgttacattttccaatttaaaaaatctgtaatAGAGTTCCACAACATTTTTTGTCACCAAGAATATAATTTGAGATTACATCTGAGAATAGGTCTTCCCTTCTCTGTCAAACTCATCCTTGATTCAATAAACTTATTTTACAGCCATTTTCATGTATGACcctttataaaacagcagtCCTGTGGCTCAGGTTGAGTTTCAAATTGTTACCGCTATGGTGCATTGTAATCCAGGGTTGGAGAGCAAAGTGcaagacacattttacagtgcatgGCTTATAAtgtcaaatattttgaaaaactcCCAAGTAGCTGGGTGGAAAATATCAGCTACATTTGAGATGTGTAGAAACCTGTTCTGTACAAGAAGGCATTTCTGAGGTGGCACAGCTGCTTTTGACAGAATGAGATGGTAGACGCCTTGTGTGAATGAGATCACCAGACTCCACGGGCGAGTCGGCCAGTGCGTGCTCAGCGGGTGCCGTGTATCAGGACGGCGGAGGCGGAAGAGGAGGCATCTTCCTATTCTTTTCCCTGCTGTGTTGCACAAGTCGTCATGGATCGACTGGGATGAATCGCTCTGCTTGGAACATATGCATCATAAGAAAAGTATTCAGCCTTGCCAAGAAAATACATCTGTCCTGACTTGAGCCAAGCAGTTAGATGTTAAGCGCTTATTCACTAACTTAATCAAAGTAAATACTTGCAGTACCATCAACTCATTATAAATCATATCAGATTACATGTACTCCATACTGACCCTGTTGCACAGTTTAACAGGTGGCTATCAGCTATCAGTTTGTGCGTGTGCTATTTGGTTATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76170 lncRNA upstream 568071 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 583613 9407657 ~ 9408017 (+) True G60886
TU76100 lncRNA upstream 741816 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 1105174 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 1181761 8807002 ~ 8809869 (+) True G60729
TU76395 lncRNA downstream 274972 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 478040 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 503905 10506399 ~ 10507213 (+) True G61095
TU76513 lncRNA downstream 746050 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 779272 10781766 ~ 10783898 (+) True G61153
AMCG00020109 mRNA upstream 44536 9943493 ~ 9947094 (+) True AMCG00020109
AMCG00020103 mRNA upstream 66359 9910235 ~ 9925271 (+) True AMCG00020103
AMCG00020102 mRNA upstream 86982 9892144 ~ 9904648 (+) True AMCG00020102
AMCG00020101 mRNA upstream 175691 9809990 ~ 9815939 (+) True AMCG00020101
AMCG00020105 mRNA upstream 203597 9784566 ~ 9788033 (+) False AMCG00020105
AMCG00020110 mRNA downstream 27314 10029808 ~ 10035881 (+) True AMCG00020110
AMCG00020111 mRNA downstream 36266 10038760 ~ 10040058 (+) True AMCG00020111
AMCG00020113 mRNA downstream 62196 10064690 ~ 10086510 (+) True AMCG00020113
AMCG00020115 mRNA downstream 104871 10107365 ~ 10142444 (+) True AMCG00020115
AMCG00020114 mRNA downstream 149732 10152226 ~ 10153275 (+) True AMCG00020114
TU76237 other upstream 203578 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 3805546 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4629767 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4632265 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 5155833 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 2517270 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2533044 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 2613298 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3347183 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 3830676 13833170 ~ 13834832 (+) True G61894

Expression Profile