RNA id: AMCG00020110


Basic Information

Item Value
RNA id AMCG00020110
length 3585
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00020110
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10029808 ~ 10035881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGCATCCTCTCTGGTCCCAGCGCTCCCAGCGCTCCCAGCGGCACCAGTGTGCGGGGGAAGATGCGGGGGGACTGCTGCACCGGAAGCAGGAAGTATGCATCCCCAGTATCCGTGCGTGGTGCGTGAACTGCTCCTACTGACTGGCTGTGTGGGGATCCTGATTTTACCTGATGTGCCCATCTCTTATCCCGTATACAAGCTGGGATACTTCACTATAGCCGGCCAGGCTCAGCGGCTGGTTTGTCCCCGGTGTGAAACAGCCTGCATGCATTTCGCCAGCACATGGACAGCCGGGTTTGCAGCCGAGGAGATGCGCTGCAGTAACTTGGTGCTTTGAGGGGTTTTTTAGGGGGAAAACACATCATCATTCGAGTGTTTCACGATGACACTCAACTCGGATATGTTCTACTTCAAGTTCATAAACCATGGTGACTCTGTCCTGCAAAAAATGAACGTGCTGCGGGAGGAGAAGCGGTTCTGTGATGTCACCTTGCTGATCGGCAGTTACGAGTTCCACGGGCACAAGGTGGTGCTGGCCGCGTCCTCTCCGTTTCTCCGGGACCAGTTCCTGCTCAACGAGTCGAAGGAGCTGAACGTCTCGGTGCTCCAGAACGCCGAGATCGGCAGGCGGCTGATGCTGTCCTGCTACACTGGCGTCCTGGAGTTCCCAATGAAAGAGCTGGTCAACTACCTGACTGCTGCCAGCGCCCTGCAGATGAGTCACGTTGTGGAGAGATGTGCGCAGGCAGTCTCTCAGTACCTGGACCCCACACTTGCCAACTTGAAACGGGAGCAAAGCTTCGATGGTGCCTTATCTGAAGACGAGAGGGATCCCAGCTCTGTGTCCCTCAACGGGGAGGACATCCCGGAGCACGACGAGGGGGAGTTTGACTTGGACTCTGAGGACAGCGTTCAAATAGTCCAGACGGAGACGATCCCCAAAGCCCCGTTTAAGTGGAAGCAGGCACCGATCaaagggaaaatgtattattcttgcTCTGAAACCCCCCAAACCCACATACAGGCTGATTTTGCAGACGGCTCCTTAGAGGACCAGGAGGAAGTCAGTGGGGACATTTACATGCTGGCCGCCCATGAGATTCAGCTCCAGGGCTTAGCCTCCGACGACCTCTCGCCCCAGAAAGGAGACTCTCCCAAGCGATCCGAGGGCAAGTCGGCCCTGATCAGCAAAATCGTGTCCGGGGGGGGCTTCACCGAGCAGGACGTGCTGCTGCAGAGACCGTACTACTGCCGCAAGTGCGACCGCATCTTCCAGCACCTGGAGAACTACATCAGCCACGTGAAGGAGCACAAGCTCTACCTGTGCCTGCTCTGCGGGAAGACTTTCTCGCAGAAAAGTAACCTGACCCGGCACATACGTGTGCACACAGGGTTCAAACCTTTTGAGTGccccctctgcaagaaagctttCAGCCAGAAAGCTACCCTGCAGGACCACATCAACCTCCACACGGGCAACAAACCCCATAAATGCAATTACTGCGCCGTGCATTTCGCCCACAAACCTGGCCTGAGACGCCACCTGAAAGACATTCACGGAAAGAGCAGTCTGGAGAATATGTCTGAAGAGGTGTGAGCTGTTCCTGTGATCGGCTGGGTGGAGGCTCAGTTACTCAGCGTATCCAGCTCCAGTTACTCTGTTTTTAAGATCATAACCATGGCTAGGTTTGTCAAGAACCTTTTACCAGCCATAGTGCACTGCGAAGGGGGCAGCGAGGCAGTGAAGCAGTGATAATGCTAGGGAAGATGAATAGAGAAGCCTTTTTAACATTAAGTGACAATTAGTGTTCTCCATACTTTATACATTTAAGCCCTggataataatattgaaatgaataTGTCAACAAGCCTTTTAACTGTTGCTGCTGAAGGCTTAACGTGTTACTGGTGTTACTACACCTACTGGTCTGCTAGTGAGACAAAGAGCCTATAGTCTTTGACAAAGGCCCTAATGTGTGGAAATGTTGTTTACCACTTCTGTGTTAGTGTACCTAattgttgaaaaatgtatagCTAAATAGGATACTAAATACTGTCTGTTATTGTTGACCAGTGTGACTCTTTCTGACGTGCTTTTATCATCACTCTTCTAATTgttacactttttaaaacatctttgtCTGAAATGCAGTCTTTATAGGAAAGTacgtttttgtttattttttatgcctTTAGATGACCAAACGTACAAATTGCCTGTTATTTTCATATATCTacccatttatttaaaaaaggcactTAGTGGGGTTTTGTAAGGGCTAGACCTAAGTGTTAACTGTACttgaaataacaaaacactgacGTTCTAGAAACATCTTTCCTGAAAATTTCTAAAACCGGTATGGTTAACAGAAAGAGTTAATTAATTGAACGCCTCTGACGGAGTAGTGTGGAAAATCATTTACGTGCTCTTACGTGCACAATGGTGGGAAATGAGCTGTATACAACGTGGGAAAGAAAATACGAATATTAATGTAATCAGCAATTGTATCAAATGGGCTTTCCATTTTTGTGTGACAGTAATTACATTGTCCTGTAATCTTCTTGGCAATCATTCTGGAGAAGTCTTAATAGGAGCAGAAACCGCAGGATTAGAACGGAAAACACGTATAATTGAATATGTAACATGGGAGAAATGTCATCAAGAATATGATGGTGTTTATAAACTCTTTCAATGTCTGTTTGGAGTCTTTGTCagtgaaaatgtacaatgttCCTCTTGTCAGTAGatattaatgtatacatacataaatgtatgattACTGTTACCtgctctttttaattaaaaacaacttaattaGTTAAGAAAAATCGTTATCTGTTCTATTACCAATGACTAAAGGTTACTTAAGGAGACTTTAGTAGTTAGCTTAGCCAATACATGTGTTGTAAAGCTATATAGTATGATGGTTTGATGATCAATCATAGCCTAGCTAACCTATTTATTAAAACACTAGAATGTGTAAAACCATTCAACCttattgtgatgtttttattttcttgatggCACACAATCAGCTGTACTGACTCTCTTGTACAAAATGTGGATGTTAAGAAGCTTGTATTTCTGTAGTCCAAAAGCCTTCAAACTGACTGTTTTTCATAATTCACATTAAAGAAcatttgatagtttttttttttattattaattgatttgataaATCAGTCTGTGTTCAGAAGTACATctctattttcttattttaattacatttgggttctccaaataaaaaaaaatcttctcgGATGATTCTGAgcatacaagtttaaaaaaaaaaaagaaagaaaacaaattgtatgCAGATTAGCCACTACTGTTTTACCTGAGTAAAGGGTGCCACTGTCAAAACCTTAGAAACGGGACTCCTGAGTTTCTCAATTGGTAAAGTCTTCACAAACTGAACAGGTTGAACCATACCGTCCAGAGATCACTTGTCATTAGTCCACTTGTGAAGAAACGTGTCTGTAGTGCATGCTGGCTCATCTTGTTTCAAATTTTACTTGATGGTGTTGGTTTTAAAAGGATGTCTACTGTCTACACTATAAGCTCCATCAAAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76170 lncRNA upstream 606249 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 621791 9407657 ~ 9408017 (+) True G60886
TU76100 lncRNA upstream 779994 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 1143352 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 1219939 8807002 ~ 8809869 (+) True G60729
TU76395 lncRNA downstream 241585 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 444653 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 470518 10506399 ~ 10507213 (+) True G61095
TU76513 lncRNA downstream 712663 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 745885 10781766 ~ 10783898 (+) True G61153
AMCG00020108 mRNA upstream 27314 9991630 ~ 10002494 (+) True AMCG00020108
AMCG00020109 mRNA upstream 82714 9943493 ~ 9947094 (+) True AMCG00020109
AMCG00020103 mRNA upstream 104537 9910235 ~ 9925271 (+) True AMCG00020103
AMCG00020102 mRNA upstream 125160 9892144 ~ 9904648 (+) True AMCG00020102
AMCG00020101 mRNA upstream 213869 9809990 ~ 9815939 (+) True AMCG00020101
AMCG00020111 mRNA downstream 2879 10038760 ~ 10040058 (+) True AMCG00020111
AMCG00020113 mRNA downstream 28809 10064690 ~ 10086510 (+) True AMCG00020113
AMCG00020115 mRNA downstream 71484 10107365 ~ 10142444 (+) True AMCG00020115
AMCG00020114 mRNA downstream 116345 10152226 ~ 10153275 (+) True AMCG00020114
AMCG00020116 mRNA downstream 134869 10170750 ~ 10204555 (+) True AMCG00020116
TU76237 other upstream 241756 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 3843724 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4667945 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4670443 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 5194011 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 2483883 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2499657 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 2579911 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3313796 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 3797289 13833170 ~ 13834832 (+) True G61894

Expression Profile