RNA id: AMCG00020115


Basic Information

Item Value
RNA id AMCG00020115
length 1824
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00020115
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10107365 ~ 10142444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATGGATGACAAGGCCTCAGTTGGGAAAATTAGCGTTTCTTCAGACTCGGTTTCCACCCTAAACAGTGAGGATTTTGTCTTGGTTTCCCGGCAAGGGGACGAAACGCCATCTACAAATAATGGTAGTGATGATGAAAAAACAGGACTGAAGATCGTGGGGAACGGGAGtgagcagcagctgcagaagGAGCTGGAGGATGTTCTGATGGACCCCTCATTGGCAGAGCAGCCCGCTGGCGGGGATCATGCGGGTACCCCCTCAGAGAGCGAGGCCTCCCCGTACTACCTGGAGCAGGAGCACCCCACCTCCGCCGCCCATACACTGGTCTACCCCGGGCCTGCCAGTGTCCTGCCCAAATTAGAAATGGTGCTACCAGTCAAGTCTGCCCAGGATGAGTCAAACCCCTGCACTCCAGTGCCGGACGAGGACAGCGTTGTGTTCAGTAAGCTGACGTATCTGGGCTGTGCGTCCGTTAATGCCCCTCGCAGCGAGGTGGAGGCTCTGCGCATGATCTCTATCCTGCGGGGCCAGTGTCAGGTGCCTTTAGACGTGACCCTCTCAGTGCCTAACGTTTCCGAAGGAACAGTAAGATTATTAGATCCACAGACAAACACTGAAATAGCAAACTATCCAATTTACAAGATCCTGTTCTGTGTGAGAGGGCATGATGGGACCCAGGAGAGCGACTGCTTTGCCTTCACTGAAAGCCACTACAATGCAGAGATCTTCAGGATCCACGTCTTCCGATGCGAAATCCAAGAAGCGGTCAGTCGGATACTGTACAGTTTTGCCACAGCCTTCCGAAGGTCAGCCAACAGAACCCCTCTGGCAGCGCAGCCACCCCCCTTGACACCCGACAGCGATGTCTTTACATTCACCGTCTGTCTGGAAATCAAAGAAGACGATGGAAAAGGTTCCTTCAGTGCTGTatcaaaagacaaagacaagCAGTGCTTCAAGCTCCGGCCAGGCATGGATAAGAAGATCGTCATCTATGTTCAGCAGACTTCCAACAAGGAGCTTGCCATAGAAAGGTGCTTTGGTCTTCTGCTCAGTCCCGGCAAAGATGTGCGTAACAGTGACATGCATTTACTGGACTTGgaATCGATGGGCAAAAGCTCAGATGGAAAGTCGTACATCATTACGGGGAGCTGGAACCCTAACACTCCACACTTCCAGGCTGTCAATGAGGAAACGCCAAAAGATAAATTAATGTACATGACGACGGCAGTTGATCTGGTCATCACAGAGGTGGAGGAGCCTGTCCGATTCCTCCTGGAGACTAAAGTCCGAGTATGTTCTCCCAACGAGAGGATGTTCTGGCCTTTCAGCAAAAGGAGCTACACTGAGACTTTCTACCTAAAGTTAAAACAGATGGAGCGGAAGGATAGGAAGAGCAACACGGACACACTCTACGAGGTGGTGAGCCTGGAGAGTGAGATGGAGAGGGAACGCAAGAAAACCACAGCCAGCCCTTCCATCCCTCCGTCTACCTCTCAGAGCTCCATGATCCCTTCACCCCCTGACGATGACGAAGAGGAAGACAACGACGAGCCCCTGTTGAGTGGCTCTGGAGACGTGTCAAAGGAGTGCGCTGAGAAGATACTTGAAACATGGGGGGATCTGCTGTCAAAATGGCACCTGAATCTCAGTGTGAGGCCCAAGCCACTGCCGGCGCTGGTACGCAGCGGGGTCCCGGAGGCTCTGAGGGGAGAGGTGTGGCAGCTCCTGGCGGGCTGCCACAACAACGACCATCTGGTAGAGGAATACAGGACACTCATTACCAAGGACACCGTGTCTAGATCCTGCACAGCCCTCTGA

Function

GO: NA

KEGG:

id description
K20284 RABGAP1, GAPCENA; Rab GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76170 lncRNA upstream 683806 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 699348 9407657 ~ 9408017 (+) True G60886
TU76100 lncRNA upstream 857551 9249600 ~ 9249814 (+) True G60836
TU75996 lncRNA upstream 1220909 8886187 ~ 8886456 (+) True G60753
TU75970 lncRNA upstream 1297496 8807002 ~ 8809869 (+) True G60729
TU76395 lncRNA downstream 135022 10277466 ~ 10346391 (+) True G61064
TU76416 lncRNA downstream 338090 10480534 ~ 10499462 (+) False AMCG00020122
TU76442 lncRNA downstream 363955 10506399 ~ 10507213 (+) True G61095
TU76513 lncRNA downstream 606100 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 639322 10781766 ~ 10783898 (+) True G61153
AMCG00020113 mRNA upstream 20855 10064690 ~ 10086510 (+) True AMCG00020113
AMCG00020111 mRNA upstream 67307 10038760 ~ 10040058 (+) True AMCG00020111
AMCG00020110 mRNA upstream 71484 10029808 ~ 10035881 (+) True AMCG00020110
AMCG00020108 mRNA upstream 104871 9991630 ~ 10002494 (+) True AMCG00020108
AMCG00020109 mRNA upstream 160271 9943493 ~ 9947094 (+) True AMCG00020109
AMCG00020114 mRNA downstream 9782 10152226 ~ 10153275 (+) True AMCG00020114
AMCG00020116 mRNA downstream 28306 10170750 ~ 10204555 (+) True AMCG00020116
AMCG00020119 mRNA downstream 311583 10454027 ~ 10467852 (+) True AMCG00020119
AMCG00020118 mRNA downstream 326942 10469386 ~ 10477659 (+) True AMCG00020118
AMCG00020122 mRNA downstream 338208 10480652 ~ 10499506 (+) True AMCG00020122
TU76237 other upstream 319313 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 3921281 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 4745502 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 4748000 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 5271568 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 2377320 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2393094 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 2473348 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 3207233 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 3690726 13833170 ~ 13834832 (+) True G61894

Expression Profile