RNA id: AMCG00020121


Basic Information

Item Value
RNA id AMCG00020121
length 2811
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00020121
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10520781 ~ 10531263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGGGCGCGGATGgcggcggctgctgctgctgctggcggCGCTGGTCGGCGCGGCGCGAGGCTACTTTTCGGAGGAGAAGCCGCGCGAGGAGTCCGGCACGCGGCCGCCCGCCGTGGTGCTCGCGGTCATCGCGCGCAACGCCGCGCACTCGCTGCCGCACTACCTGGGCGCCGTGGAGCGGCTGGACTACCCCAAACAGCGCATCTCCGTGTGGGTGGCGACAGATCACAACCTTGACAACACCACTGCAATCCTTCGAGAATGGCTGACTGTTATGCAGAAGTATTATCACAAAGTGGAGTGGAGACCTATGGAGATGCCCACGTCATATCCTGGGGAACTGGGACCCAAGCACTGGCCGAATGGGAGATTCGAGTACGTCATGAAACTGAAACAGGCTGCGCTCAACTTCGCCAAGAGACAGTGGGCTGACTACATCCTGTATGCTGACACAGATAACATCCTGACCAACCCCAAGACTCTCAGACTTCTTATTGCTGAGGACAAGTCTGTCGTTGCTCCCATGTTGGACTCCCAGAGTGCTTATTCTAACTTCTGGTGTGGCATCACCCCACAGGGGTACTATCGACGTACAGCGGAGTACTTCCCCACTAAACATCGCCATCGCCGCGGCTGCTTCCCTGTTCCCATGGTGCATTCCACCTTCCTCTTGGATCTGCGCAGGGAAGGTGTCAAGAAGTTGGCCTTCCACCCCCCCCATCCTGACTACTCCTGGCCCTTTGACGACATTATCGTCTTTGCGTTCTCCTGCCGCGTCTCAGAAGTGCAGATGTACCTCTGTAACAAGGTGCGCTACGGATACCTGAACGTCCCTGCAAAGCCACACCAAACAAATGACGACGACCGAATCAACTTCATCCACCTTCAGCTGGAGTCTATGATTGATGGGCCACCTATGTACCCCTCACAACATGTATTCCTGCCCCCCAAAACTATGGACAGGATGGGTTTCGATGAGGTGTATCTGATCAATCTGCGCCGCAGGCCAGACCGCAGAGAGAGGATGCTGTGGTCCCTGTACGAACAGGAAATCGACACCAAAGTGGTGGACGCTGTGGACGGAAGTGCCCTCAACAGCAGTGACATCAAGATCCTGGGCGTAGACCTCCTGCCTGGCTACTATGACCCTTTCTCTGGACGCACCCTCACCAAGGGTGAAGTGGGCTGCTTCCTCAGCCACTACTACATCTGGAAAGAGATTGTGGACCAGCAACTGGACAAGGCAGTTGTGTTTGAGGATGATGTTCGTTTCCAAGGCAACTTCAAACGGAGGCTCATGCGTATGATGGAGGAGATTGAGAAGGTGGAGCTGGACTGGGACCTCATATACCTGGGCCGCAAGCAGGTGAACCCGTCTGACGAGAAGCCCGTGGAGAACGTGAGGAACCTGGTGATCGCGGACTTCTCCTACTGGACTCTGTCCTACGTCATCTCGCTGCAGGGCGCCCAGAAGCTGCTCAACGCGGAGCCCCTCTCCAAGATGCTGCCCGTGGATGAGTTCCTGCCCATCATGTACGACAAACACCCCAATGAGAAGTACAAGGAGCATTTTCCCAACCGCAACCTTCAAGTGTATTCCACACGCCCTCTGCTGGTGTTTCCTTGTCACTACGCTGGGGACCCTCAGTGGGTGAGCGACACGGAGACCTCCACACTGTGGGACGACGATTCGGTGCGGACAGATTGGCGCGGGTCCCACAAGACTCTGAAGGGTGCTCCTCCCAATGCCGGCCTACAGAACGCCTTCCGGGACGAGCTCTAGCTGCAGGCCCCTGCATTGAAAGACCTTTTTACTTGAACTGGGCAGGTGGGAGGCAATACATTCCAGAGGTTGGAACTGAGATCTAGCTGGCATATGAACTTTTAACCGACACCATCAGAGGAGTAACTCGGCGAGACAATCAGGAGAAGATGGAGACAGACGGCGGAGGACTGCTCACATAAGATTGCACCTGGAACCACGGCTCAGCTGTCCCAATTGATTTTTGTGTGCCAGTGGAGGccgatgtgtgtgtgtatgtgtatgcatgagtgtgtgtgctctcaaataatatttaaatagaactTTGAATTTATAATACCAGCTCATATACCTGATTTAGAATTCAAAATGGTAGTATGTTCATTCAGGAACACAACATCTTGGGGGGCGGGGTTAAAATTCAGCACAACTACAAAGTTTGGAGTATTGACATTTCAGCACAGAGAGAAGCTCTCTTCCACACAAGAGACCAAAGCCTGATTTATCTGGAGTCTAAAGAGTTTACATTGACAAACACATTGTGGCAGAGCAGTGCAACCACTTTGTTGTGTGTTCTTTTGACAGGAAGGGAACTATAGTTTCCTTTGCTTTCTATTTTGAATATCTTACCACAAcctacaaatacacacacagtattattgacaaaccaaccaaaaatcCTGCACATGTATGGTggatatgttaaaaataataacgtGCCCTCTAATATAATTAATCTGATCCATCTCCTGTTTCTGGACTTAATTACTTTCTGGACATACTTATTTCTACTGCTGTTGCAAAACATATTGTCATCCTGCTCTCCCTTGGCAGTAGACTGTTTTGTCATTGCATAACGTGATGAAACAAGTttcccaccaccaccaaaatGAACTGTACGTACAGCCCATATAGTAGTACTGGTGTTGCCCCTGTGTTTGTGAGTCTTTTGTATTTGTGGAAATGCATGTCAAGTAAAACACCTGTAAAAGTGTCAGGacagtgtaaaaaataaataaagaccgtgttttttactttgttaCA

Function

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76442 lncRNA upstream 13568 10506399 ~ 10507213 (+) True G61095
TU76416 lncRNA upstream 21319 10480534 ~ 10499462 (+) False AMCG00020122
TU76395 lncRNA upstream 174390 10277466 ~ 10346391 (+) True G61064
TU76170 lncRNA upstream 1097222 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 1112764 9407657 ~ 9408017 (+) True G60886
TU76513 lncRNA downstream 217281 10748544 ~ 10755375 (+) True AMCG00020129
TU76518 lncRNA downstream 250503 10781766 ~ 10783898 (+) True G61153
TU76571 lncRNA downstream 435094 10966357 ~ 10969598 (+) False AMCG00020134
TU76581 lncRNA downstream 477153 11008416 ~ 11011745 (+) True G61205
TU76626 lncRNA downstream 761213 11292476 ~ 11300032 (+) True AMCG00020143
AMCG00020122 mRNA upstream 21275 10480652 ~ 10499506 (+) True AMCG00020122
AMCG00020118 mRNA upstream 43122 10469386 ~ 10477659 (+) True AMCG00020118
AMCG00020119 mRNA upstream 52929 10454027 ~ 10467852 (+) True AMCG00020119
AMCG00020116 mRNA upstream 316226 10170750 ~ 10204555 (+) True AMCG00020116
AMCG00020114 mRNA upstream 367506 10152226 ~ 10153275 (+) True AMCG00020114
AMCG00020120 mRNA downstream 1450 10532713 ~ 10538018 (+) True AMCG00020120
AMCG00020131 mRNA downstream 10514 10541777 ~ 10544364 (+) True AMCG00020131
AMCG00020128 mRNA downstream 28407 10559670 ~ 10596696 (+) True AMCG00020128
AMCG00020127 mRNA downstream 76540 10607803 ~ 10628137 (+) True AMCG00020127
AMCG00020130 mRNA downstream 165275 10696538 ~ 10697008 (+) True AMCG00020130
TU76237 other upstream 732729 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 4334697 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 5158918 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 5161416 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 5684984 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 1988501 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 2004275 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 2084529 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 2818414 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 3301907 13833170 ~ 13834832 (+) True G61894

Expression Profile