RNA id: TU76513


Basic Information

Item Value
RNA id TU76513
length 2439
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00020129
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10738502 ~ 10755375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAACAATCGCCTCCTTTTATAAAGAAGATGGTGATATTATCATTATGGACTCAGAAGAGAAAGCTACATTGGATTGCCAGGATGCCGATTGGACTAGCACTCCTGGAAAAGCAAGGGGTTGTTTAGCAAGAGGACTGGGGAGAAGCTCCAGACTTCTAACACCTCCCAGTCTCCTGCAGCGTTGCAGTCCAGCGTTGAAAAGGAGGTGGAGGATCTTAAGAAGAGACAAGGGGAGTTGGACTTGGAAATCACACAGTTACAGACTGAagGGTTGTGTGTAGAAGAGCTGGACCAACACATCAGCCTGCTTCATGAATACAATGACATTAAAGACACTGGACAAATGCTGCTTGGCAGGCTGGCAGCAATCCGAGGTGTGACAACAAAGGATGTGTATCGAGACTTCAGCATGGATTTGGAGGACTAATGTTTCTAGAGGAATGCCGTTCCTTTCTCCCTCATCCCGCATTGTCCTACTAAAGAGCATAATAGGGTAGCCTAATTGAAGATGAATTGAAGGGTGGGGCAGCAGAAAAAGTATTTCATAGTCTTCATGTAAGCAAAAAGACTAGTTTAACACACCATGGGTTATTTACAGTTATCGTTGGGGGCCTGCTCTATTATTCAAGACTCACCATTACAATCATAGTACTCAGATGGACGTTTTCCACTGGGTAGAAGTCAGATGACTCTGATAATCAAGAGTCCTAAGTCTTTAACACATTCATCATATTTATTGTTCAATTTATACATGTCAATTTATTTATCTTGCTGCTACCAGATATTTAGCAGAGAATATGCTTATTAAATTAAGACAGAGCAGTCTTTCTTGAGGCCTCTAAGATACTGTGAGTCTTTACAAGTGGAGCTATAATATTACACTGATTAATATACTGCCGTGTTGTTTGAGCTTGTCTCCCAACATCAGCCTCTGGAGGTGCAGCAGTTATCTCTTCCTCAAACACTAGCGATCGATGAGCAATCTTGAGACACAGAGTTGGACGCAGAGTTCCATGTATTGTCATAGGGACAGACTGGTTaaggaaaaaatgcaaaaatgtgcTCAGCATATTCAAATTATTGTGTCCATAATCATCTGCCATCCATGCAACTTTCATCAGTGCTGCCTGCACATGTATATGAGTTGTTGGTCAATGGTCATGATCAATGCTGACTTATTAGCTGAGTGATAGTGGGGAAATGTGGAAGTGGTGATTTATGACTATAAATGAAAGAAACTATTACAGCATATAAGGGCTGTCTGCATAAGACAAATATGAAGGCAGAACACATCCATGTAAGACAGACTGCGATATTTCAAAGACAAATGTACGTATATGCGTGGAAAAATActaatatttgaataatttcattttaaatgataaatgttgaaatatctCTCCAGGAAGTCTTCCATTTAAAAGGTGAACAAATAGTTTACTAAGTTTCACAACTTAGAGAATGCCATCAATCTTACCAAAGTGActttattgcttaattgcacTGAATATCAAGCTTTTGGTATATATGACACATATTTGGTATTGTTACTACGTGGCTTTAGGTCAAATTGATAGTTGCTTGGCCAATGTTCAGTCACATCTGTAAGAAAATTCTGAGATTTCAAAAGACTGACTTTCCTTATAATTACGTCTTTCCtcccttgtgttttgttttcttcagggaGTAACCAAAATAATTAAGCTCTACTGTACAACAGTGTCCAAGCttcttttgaaaatgtccttAAATAGAGCTGGGCTTGCCTCCCCTCTTCCTTCTCTTGTACAAATCGGTCTTTCGCACACTTCAAGATAATGAAAACTGCCGAGAGTCCTGTGAAGGAATAGGTCTGTGCATTTCGCCACATATTCTCCTGGGAGTCTGAGGTGATTAATAAAAGTGGCCTGACCTGTGGGAAGCTGTGTGAGTTTCTGGCCTTGACAGGTACAGTGCAGCAGGTTGTGAATGTTGCCTGAGGGCCTGGAGAAATGGCTGTTAACCTTGGTGAGTCAGGGGTTTTGGTGGAACACTATTGTGTGTAAGGAGCAGACACTTTCCACAGCCCTAGATGaataaagaaatgtgttgatACTGCTTAACAAGTAACCAGTTCTGTGAAATAGTTTcaaattgaaagtgtttttttttttgtatgtaaggGTGGGGAAGCATAGCTGTGTGAAGGAGCCACAATTCATTTTGGAAGCTGGGAAATGGGAAGGGGGTCTGGAACTACTTGTTTATATACTTTGAAACCTGTAAATACAATTGATTTCTtcatgtagtttattttcaatagCCTGATTGAATACATGTCTGACACATCTCATTTTACTGTGTCCTGTGTTAACACCACTCAGTGTAAAACACTTTTGAGTTATTTGTTCAACATGAAAGGGttcattgtgaaaataaaattttgcagacttttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76442 lncRNA upstream 241331 10506399 ~ 10507213 (+) True G61095
TU76416 lncRNA upstream 249082 10480534 ~ 10499462 (+) False AMCG00020122
TU76395 lncRNA upstream 402153 10277466 ~ 10346391 (+) True G61064
TU76170 lncRNA upstream 1324985 9423337 ~ 9423559 (+) True G60888
TU76168 lncRNA upstream 1340527 9407657 ~ 9408017 (+) True G60886
TU76518 lncRNA downstream 26391 10781766 ~ 10783898 (+) True G61153
TU76571 lncRNA downstream 210982 10966357 ~ 10969598 (+) False AMCG00020134
TU76581 lncRNA downstream 253041 11008416 ~ 11011745 (+) True G61205
TU76626 lncRNA downstream 537101 11292476 ~ 11300032 (+) True AMCG00020143
TU76641 lncRNA downstream 738251 11493626 ~ 11521381 (+) True G61249
AMCG00020130 mRNA upstream 51536 10696538 ~ 10697008 (+) True AMCG00020130
AMCG00020127 mRNA upstream 120407 10607803 ~ 10628137 (+) True AMCG00020127
AMCG00020128 mRNA upstream 151848 10559670 ~ 10596696 (+) True AMCG00020128
AMCG00020131 mRNA upstream 204180 10541777 ~ 10544364 (+) True AMCG00020131
AMCG00020120 mRNA upstream 210526 10532713 ~ 10538018 (+) True AMCG00020120
AMCG00020126 mRNA downstream 645 10756020 ~ 10771515 (+) True AMCG00020126
AMCG00020134 mRNA downstream 190217 10945592 ~ 10966901 (+) True AMCG00020134
AMCG00020138 mRNA downstream 249558 11004933 ~ 11008268 (+) True AMCG00020138
AMCG00020137 mRNA downstream 272286 11027661 ~ 11063288 (+) True AMCG00020137
AMCG00020142 mRNA downstream 448474 11203849 ~ 11205492 (+) True AMCG00020142
TU76237 other upstream 960492 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 4562460 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 5386681 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 5389179 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 5912747 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 1764389 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 1780163 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 1860417 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 2594302 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 3077795 13833170 ~ 13834832 (+) True G61894

Expression Profile