RNA id: TU76626


Basic Information

Item Value
RNA id TU76626
length 2676
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00020143
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11274024 ~ 11300032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCTTCTGGTTCTTTTAACCTCCCAAACTCTGGGGACATGTTCATGAGCATGCAGAGTCTGAATGGGGATTCTTACCAAGGGGCACAAGTCGGAGCCAATGTGCAGTCACAGGTGGATACCCTGCGTCATGTTATCAGTCAGACGGCAGGATACAGTGACGGCCTCGGAGGGAATTCTCTGTACAGTCCGCACGGCTTGAATGCTAATGGGGGATGGCAAGATGCAACCACTCCATCTTCTGTGACGTCCCCAACAGAAGGACCTGGAAGTGTGCACTCTGATACCTCGAATTGATCTCTCCACTGACGCATCCAATCCCCAAGCTGTAGGGCCCTGACTAGCACTGACTGACCAACCAGAgaagctttctttttcttgaacCAATCGTCTTGCTGCATTTTACTGTAAAACCCTCCCTCACCCTAGGGAtcgcaaaaaaaaacaaccagaaaaaaaaagacgacgacaacaacaaaaaacaacaaccatctTTCGGACTCCTCTGTTTGTCATGGCAACTCGGCAGTAGAGCCTTCACTCCTTCCATACTGCTTGAAGTGAATCCGGTGCCCTTTTTTTCCTGAACAGTTTTTTATATCTCCATGAAACTGACAAGACCGCCACTGcctggctttttgtttttgtaccaTTGCGTCGTTTCTCGGTTGCCATCAGTGCAACAGGAGCAAGACCCAAAGCAGACTCTGTTCAGCGCTTGGTTTCTacgtcttcttttttttctgccttcTGCCTGACCTGCTTGATTCATTGCGGTCTATTTTTCACCCCCACTTTCTATCCCATCAGGGGAAGCCCCCCACACCCATCGCGATCAAAATACCAACCCAAACCAGGGAATGAGTGAAGAATGGTGTTGTGCTGCACATATTTTTGCTATAATGGGTTACATGAgcattgttattatcatttgtGTTTGGTTTCGATTCCTGGGTACGCGTAATGACAGATATCCTCAATATGATCCTCCACGCTCAGTCACCAGCTTGttgaatgcatttgtttcatgCTATTCTCATTATTTGTTCTCCAAGTCCAGTGTAAAGTTTAAATCAGTGCAATCTCAGTTTGCAAGGACTGATTTCTGTCAATTACtttctaatttatttgtttagtagGGATAAGATGCTACACTTTCAGGCAGCTTGGGGAAACTCCtttctttttgctttgtttggggCTTTTTTTGCCTTGCTTtggaaaaactgtaatttaataGAAATCCTGGCTGTGGCTCTGATTCAGATGCAGTATTTGATCAGCAGCACGTTCAAGTTTTGAAGAGTGCTTTCTCTCTTTTGAATGTGTCCCAAATAATCTCCTTTTTTGTAAGACAGAGTAATAATCAAattagcaaataaataaatgcaaccaTTCATTGATCTTATTTGAACATCATGCGCTTCCAAAATTCTGATTCTACTATATGTCTTTAACCCATTGTTGCTAATGGAAATAGCTTGGGTCTTACAGTAAAGGCAACTAGGTTTTTTTGGCAACAAAAGGCACCAATCACACACAAGTGTTGTATATAATGTAGCTAAAGAGTATTTATACATCCCACCAATCAAAAACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAATTTCAACATGTTCTATAGCTTAGAGTGCTCACTTACTACCTCTAAACAATATCACTACCAtggttttttgtctttttatttttattttttattttttaagttttgcatCTTGTAATAAACTCTTTGTTTCCCTTCATGTAatctaatgtatattttaatcttttaagaaaatatagaGTTGCTTTGGCGcgacttttaaaaacaaacaaaaaaaagataataatgatgatgataataataataataataataatgaaaataaagtgtgtgtgcgtgggggatggggagggagggtggggtggtgtggggtgggggggacattGGTCGTAAATTAACACCAAACAGTAAAACTGTTGTAAATACTGAAGAACATTTTGAATGTTGCTCATCTTGTTACTAATCCAcgcaaaaagagaaaaaaaaaggaaaaaaaataacaaataactgtAATGCATAGTTTCAGTATTCGGAACTGTATATTTCAAGCCCTGTCTAACAGGGTGATACgtttctttctccttttattcttttttttcctttcttttttttgtattgtatgcgATTCTGAAACTGATTAAGTCATGAAAAGATGAATTGTGGCAGTGAttctaatgtattaaaatgtttcgTGTTACTTTCTAACCAGACTACACCCTGGACTGAAGAGTCTTCCTTGTGGTAGTTATGTGTAGtttcaaacatgaataaacttTTTGCTTTCATGATAGAGCGCTGTGTTGGGTTCTTTTAATCTAACAAGGAGGTAGATAACTGTGAGGAGGCCTTTGACTCATCTGAACTCCCTCACTACTCACGCTCAGGTCATTGAAGCCTTTGAGTGAAAGTACATCTTGaaagtttgctttttttattttggcctGTACTTGCTTGTATTTGATCATCATAAAAAGGGTTCACAGAGACAACGGTGCACACATAggcatgtatttatgtgtgaCTGGAGCCACTCCATTACAACTTATTTTCTCTGGTTTTGAAGACTGTACTCATGTCGATGATTTTCCTGcagcacaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76581 lncRNA upstream 280731 11008416 ~ 11011745 (+) True G61205
TU76571 lncRNA upstream 322878 10966357 ~ 10969598 (+) False AMCG00020134
TU76518 lncRNA upstream 508578 10781766 ~ 10783898 (+) True G61153
TU76513 lncRNA upstream 537101 10748544 ~ 10755375 (+) True AMCG00020129
TU76442 lncRNA upstream 785263 10506399 ~ 10507213 (+) True G61095
TU76641 lncRNA downstream 193594 11493626 ~ 11521381 (+) True G61249
TU76732 lncRNA downstream 701668 12001700 ~ 12003127 (+) True G61329
TU76734 lncRNA downstream 708760 12008792 ~ 12009100 (+) True G61331
TU76735 lncRNA downstream 711629 12011661 ~ 12011876 (+) True G61332
TU76736 lncRNA downstream 711928 12011960 ~ 12012407 (+) True G61333
AMCG00020142 mRNA upstream 86984 11203849 ~ 11205492 (+) True AMCG00020142
AMCG00020137 mRNA upstream 229188 11027661 ~ 11063288 (+) True AMCG00020137
AMCG00020138 mRNA upstream 284208 11004933 ~ 11008268 (+) True AMCG00020138
AMCG00020134 mRNA upstream 325575 10945592 ~ 10966901 (+) True AMCG00020134
AMCG00020126 mRNA upstream 520961 10756020 ~ 10771515 (+) True AMCG00020126
AMCG00020145 mRNA downstream 172500 11472532 ~ 11494336 (+) True AMCG00020145
AMCG00020144 mRNA downstream 206558 11506590 ~ 11521389 (+) True AMCG00020144
AMCG00020146 mRNA downstream 254171 11554203 ~ 11554448 (+) True AMCG00020146
AMCG00020148 mRNA downstream 317473 11617505 ~ 11627135 (+) True AMCG00020148
AMCG00020147 mRNA downstream 373678 11673710 ~ 11699838 (+) True AMCG00020147
TU76237 other upstream 1504424 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 5106392 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 5930613 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 5933111 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 6456679 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 1219732 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 1235506 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 1315760 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 2049645 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 2533138 13833170 ~ 13834832 (+) True G61894

Expression Profile