RNA id: AMCG00020146



Basic Information


Item Value
RNA id AMCG00020146
length 246
RNA type mRNA
GC content 0.67
exon number 1
gene id AMCG00020146
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11554203 ~ 11554448 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCACGGCCCATCAGAAAAGAGGCTTGTGGTCGTGACAGCAGGTCGCTGTGTGCCCGCAGGCTCGGGGTGCCAGGCTGTGTGCGAGGGCTGCCGGCGGCCCATCTCGGACCGCTTCCTGATGCGCGTCGACGAGGCGTCCTGGCACGAGGAGTGCCTGCAGTGCGCGGTGTGCGAGCAGCCCCTGAGCACGAGCTGCTACTGCCGCGACGCCAAGCTCTACTGCAAGCGCGACTACCAGCAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76641 lncRNA upstream 32822 11493626 ~ 11521381 (+) True G61249
TU76626 lncRNA upstream 254171 11292476 ~ 11300032 (+) True AMCG00020143
TU76581 lncRNA upstream 542458 11008416 ~ 11011745 (+) True G61205
TU76571 lncRNA upstream 584605 10966357 ~ 10969598 (+) False AMCG00020134
TU76518 lncRNA upstream 770305 10781766 ~ 10783898 (+) True G61153
TU76732 lncRNA downstream 447252 12001700 ~ 12003127 (+) True G61329
TU76734 lncRNA downstream 454344 12008792 ~ 12009100 (+) True G61331
TU76735 lncRNA downstream 457213 12011661 ~ 12011876 (+) True G61332
TU76736 lncRNA downstream 457512 12011960 ~ 12012407 (+) True G61333
TU76738 lncRNA downstream 461250 12015698 ~ 12016151 (+) True G61335
AMCG00020144 mRNA upstream 32814 11506590 ~ 11521389 (+) True AMCG00020144
AMCG00020145 mRNA upstream 59867 11472532 ~ 11494336 (+) True AMCG00020145
AMCG00020143 mRNA upstream 256550 11274024 ~ 11297653 (+) False AMCG00020143
AMCG00020142 mRNA upstream 348711 11203849 ~ 11205492 (+) True AMCG00020142
AMCG00020137 mRNA upstream 490915 11027661 ~ 11063288 (+) True AMCG00020137
AMCG00020148 mRNA downstream 63057 11617505 ~ 11627135 (+) True AMCG00020148
AMCG00020147 mRNA downstream 119262 11673710 ~ 11699838 (+) True AMCG00020147
AMCG00020149 mRNA downstream 159099 11713547 ~ 11715100 (+) True AMCG00020149
AMCG00020150 mRNA downstream 214469 11768917 ~ 11811842 (+) True AMCG00020150
AMCG00020152 mRNA downstream 325634 11880082 ~ 11923630 (+) True AMCG00020152
TU76237 other upstream 1766151 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 5368119 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 6192340 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 6194838 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 6718406 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 965316 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 981090 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 1061344 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 1795229 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 2278722 13833170 ~ 13834832 (+) True G61894

Expression Profile