RNA id: AMCG00020165


Basic Information

Item Value
RNA id AMCG00020165
length 201
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00020165
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12200128 ~ 12202687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCCATCCCCTGTTAACCGCCACGTTATTCAGTACCTGTTCCCCGTCAGCTCAGCAGCCGataaaccaaacaaaaactcCCCGAAAGATGCTCGCAGTGTCGCAGAGAACAGCGacccccagcccccagcccccagcccccagccccccagcccccagccccctgTGTCCATCTCAAACAGCGGCATTGCACGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76741 lncRNA upstream 70557 12126842 ~ 12129571 (+) False G61338
TU76745 lncRNA upstream 70557 12126842 ~ 12129571 (+) True G61338
TU76739 lncRNA upstream 183381 12016496 ~ 12016747 (+) True G61336
TU76738 lncRNA upstream 183977 12015698 ~ 12016151 (+) True G61335
TU76736 lncRNA upstream 187721 12011960 ~ 12012407 (+) True G61333
TU76855 lncRNA downstream 211992 12414679 ~ 12414892 (+) False AMCG00020171
TU76858 lncRNA downstream 212312 12414999 ~ 12468293 (+) True G61434
TU76862 lncRNA downstream 215123 12417810 ~ 12499428 (+) True G61435
TU76872 lncRNA downstream 281690 12484377 ~ 12495791 (+) False G61440
TU76859 lncRNA downstream 286834 12489521 ~ 12499428 (+) False G61435
AMCG00020163 mRNA upstream 1481 12185834 ~ 12198647 (+) True AMCG00020163
AMCG00020157 mRNA upstream 28122 12157541 ~ 12172006 (+) True AMCG00020157
AMCG00020156 mRNA upstream 205017 11992192 ~ 11995111 (+) True AMCG00020156
AMCG00020154 mRNA upstream 255728 11943279 ~ 11944400 (+) True AMCG00020154
AMCG00020152 mRNA upstream 276498 11880082 ~ 11923630 (+) True AMCG00020152
AMCG00020166 mRNA downstream 166086 12368773 ~ 12371712 (+) True AMCG00020166
AMCG00020172 mRNA downstream 179126 12381813 ~ 12395040 (+) True AMCG00020172
AMCG00020171 mRNA downstream 206275 12408962 ~ 12414951 (+) True AMCG00020171
AMCG00020170 mRNA downstream 225729 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020173 mRNA downstream 246081 12448768 ~ 12452785 (+) True AMCG00020173
TU76237 other upstream 2412076 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6014044 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 6838265 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 6840763 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 7364331 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 317077 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 332851 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 413105 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 1146990 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1630483 13833170 ~ 13834832 (+) True G61894

Expression Profile