RNA id: AMCG00020169


Basic Information

Item Value
RNA id AMCG00020169
length 1312
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00020169
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12479904 ~ 12481905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACAGTCCACTGAGCTTAGACTACTGTGGGTCtgcacagcccagcccagcccagcagaTTCAAGGCAGGAGGGGAGGCCACGCTGCTGCCCAGCTCCTATTCACTAGAGGCAAGGGGACAGAGACAGTGACAAAACCAGAGTGAATACAGGAGAAAAGGAGGACAGCGAGACACTGAGTCAGTGGGacgggaagagagggagagagcgagacacAGTGGGACAGTGAGATTGTGACTGGGCACCTCCAGTCACCAGCAACACTCAATCAAGTTTCCATGTGGgagagcacagagagaggaggaatagcagagagaggaggaggaggcggtaCAGGCCTTCAGCACCCAGACCCGCTGGTGCGCGAGGCCTACCTGTTGTCCTACGACTACATCGGGTACGTGACGGGACTACAGCCGAACTCCCGGCGCCCCCCCTCACCCGCCGCCGCCGCCCTGCGCCACGCTGGCGATGACCTGCAGCTCAAGTTCCCGATCTTCTTCCGCCGATGGCCACGTGTGTTCCAGGGCGTCACCACAGAGACCGCCTGCCCCATGCTGCTACAGCTGTTGGATGAGCACTTCCAGCCCGCAGATGCTGGCGCCTCCACCAGGAGGAGGGAGCTGGCCTGGAGCGCCGTGCTGTCCGTGTACGTGCTGGCCGGACAGATGGCTCTTCACTGCCAGGAGAGGGGCATGCTGGGAGTGCTGCCTGAGCTGCAAGAGCGCGTGGGTCAGTACATGGAGGCCGTCATCTGCCCCCAGATCCGGGACAAGGGCGGCTGGTCGGGCTTTGTGTCGCGCTACAGCAGGAAGCAGGACTTGGAGGGGCAGGTGAGAAGAGTGTGCTGCTGGACTCTGCTGTTCCTGGCCTCCAGCATCCTCTCCTACTTCCTGTGGAAACGGCAACGCACGTGAAGCCCCCCCCATGTCATGGCTCGGCTCCCCCCactcccttcctctcccctgAAGGATCTTGGCATCTCCTACAGTGACACACATGGCCATGCATTTAAGACTTTGGGGGGGTTAGTCTATCCTAACCCCTTCACTGTAGACGTCCCTGTCACTGCACTTTGAAACAACGGGCAACAGTCACAGCAGAAGTCTTTAGTCTTCTCACATCCATTGTGTCTCGAGTGCATGCTGAGTGCTGCGTTTGATCAATCTCCTCACACACCTGTGTTCCAGAGGCACTTCCACACAAGAGCTGTAAAACGTAGTGATGATGTACtgattctgtttctttctgtataaCCCTATGAGCAGGTCTGGAAAGAAGGGAGTTCAGTGTTcgataatgtaatgtttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76858 lncRNA upstream 11611 12414999 ~ 12468293 (+) True G61434
TU76855 lncRNA upstream 65012 12414679 ~ 12414892 (+) False AMCG00020171
TU76741 lncRNA upstream 350333 12126842 ~ 12129571 (+) False G61338
TU76745 lncRNA upstream 350333 12126842 ~ 12129571 (+) True G61338
TU76739 lncRNA upstream 463157 12016496 ~ 12016747 (+) True G61336
TU76872 lncRNA downstream 2472 12484377 ~ 12495791 (+) False G61440
TU76859 lncRNA downstream 7616 12489521 ~ 12499428 (+) False G61435
TU76869 lncRNA downstream 9092 12490997 ~ 12504599 (+) True G61440
TU76870 lncRNA downstream 9092 12490997 ~ 12504599 (+) False G61440
TU76860 lncRNA downstream 11947 12493852 ~ 12499428 (+) False G61435
AMCG00020173 mRNA upstream 27119 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020170 mRNA upstream 48752 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020171 mRNA upstream 64953 12408962 ~ 12414951 (+) True AMCG00020171
AMCG00020172 mRNA upstream 84864 12381813 ~ 12395040 (+) True AMCG00020172
AMCG00020166 mRNA upstream 108192 12368773 ~ 12371712 (+) True AMCG00020166
AMCG00020177 mRNA downstream 53861 12535766 ~ 12542261 (+) False AMCG00020177
AMCG00020176 mRNA downstream 81255 12563160 ~ 12564443 (+) True AMCG00020176
AMCG00020182 mRNA downstream 169254 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020181 mRNA downstream 170311 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020187 mRNA downstream 183003 12664908 ~ 12690345 (+) True AMCG00020187
TU76237 other upstream 2691852 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6293820 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 7118041 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 7120539 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 7644107 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 37859 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 53633 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 133887 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 867772 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1351265 13833170 ~ 13834832 (+) True G61894

Expression Profile