RNA id: AMCG00020176



Basic Information


Item Value
RNA id AMCG00020176
length 588
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00020176
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12563160 ~ 12564443 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGTTCCTTCTGTTGCTGGTCCTGCCAGGCAGCTCGAACGGCCAGATTGACCCCGCTCACTGCCGCTACCCTCTCGGCATGCAGGATGGCAGGATCAAGGACAGTGACATCACCGCGTCCAGCCAGTGGTATGAGTCCACAGGGCCGCAGTACGCCAGgctggagagggaggagggagacggGGCGTGGTGTCCAGCCGGGCTCCTGCAGCCCTCGGACGTGCAGTTCCTGCAGGTGGACCTGGGCCGGCTTGTGTTCTTGACGGTGGTGGGCACACAGGGGCGCCATGCGCGCGGCAATGGCAAGGAGTTCGCACGCACATACCGCCTGGAGTACAGCCGCGACGGCCAGCTCTGGGTATCCTGGAGGAGCCGTGCAGGGGCCaagGTGATTGAAGGCAACAATAACCCCTATGACTCTGTGATCAAGGACTTGCACCCACCAATCATCGCCCGGCACCTGCGCATCATCCCGGTCACACGCGTCCAGACCACGGTGTGCATGAGGGTGGAGCTGTATGGCTGCGCCTGGAACGGTGAGCTTACCATCACACTGCACAGTTGTGCTCAGGTGGGGTCCTGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76861 lncRNA upstream 56561 12499143 ~ 12506599 (+) False G61435
TU76869 lncRNA upstream 58561 12490997 ~ 12504599 (+) True G61440
TU76870 lncRNA upstream 58561 12490997 ~ 12504599 (+) False G61440
TU76859 lncRNA upstream 63732 12489521 ~ 12499428 (+) False G61435
TU76896 lncRNA downstream 17818 12582261 ~ 12585656 (+) True G61460
TU77051 lncRNA downstream 265529 12829972 ~ 12852064 (+) True G61568
TU77088 lncRNA downstream 433407 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 772553 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 776510 13340953 ~ 13341315 (+) True G61668
AMCG00020177 mRNA upstream 20899 12535766 ~ 12542261 (+) False AMCG00020177
AMCG00020169 mRNA upstream 81255 12479904 ~ 12481905 (+) True AMCG00020169
AMCG00020173 mRNA upstream 110375 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020170 mRNA upstream 132008 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020171 mRNA upstream 148209 12408962 ~ 12414951 (+) True AMCG00020171
AMCG00020182 mRNA downstream 86716 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020181 mRNA downstream 87773 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020187 mRNA downstream 100465 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020191 mRNA downstream 170432 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020192 mRNA downstream 237615 12802058 ~ 12815332 (+) True AMCG00020192
TU76875 other upstream 25408 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 25408 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 2775108 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6377076 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 7201297 5355772 ~ 5361863 (+) True G60137
TU76948 other downstream 51349 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 785234 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1268727 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 1299034 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 1383983 13948426 ~ 13951047 (+) True AMCG00020267

Expression Profile