RNA id: AMCG00020181


Basic Information

Item Value
RNA id AMCG00020181
length 1917
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00020181
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12652216 ~ 12654743 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGAGaataaaaaagaagaggaaGCCGTCGCAGCAGCAGCCAGTCCCTGGACAAGACGGCCACCATACCCCGTCCCACActctcctGCCacacaggagaggggagggCCGTGGCAGTGGCTGTGGGGGATTCTTCAGTAGCGCTCCTCCCATTCTCCAGAGCTGCCTATCTCCCCTTCCTCTGTCAGGCGATCCTCTTCCCACCCCGACTGTGTGTTCCCTGATGGCTGTTCCCTCggcaccccctgccccccccggCGTGCCAGAGTGTCCCATCTGCTTCTCCGCCTATGACAACGCCTTCCGCAGCCCCCTGCAGCTGCCCCCCTGCACCCACACCTTCTGTCTGCAGTGCCTGGCCCAGATGTGCCTCTTCCTCAAGCCACCCCAGAGCTTCCAGTGCCCCCTGTGCCGGGCGCATGTGCCCTTGCCCACCGGTGGGgccccctgcctccctcccaACATGGAGGTGGTTTCCCAGCTGCCCCTGGGCCAGAGAGGGGGCTTGCAAAGGGTCTGGCTAGAGGGATCGCAGCTGTGCTACTGGAAGACGCAATCGGCCTACAGCCCCAAACGTCTGATACATGACCCTGGAGAGGACATGGTGGTCAGGCTGCAGTTGACCAGAGTTGCCCCGGGCACGTCCAACTCTGGACCTCTGGACCTGGTGACGGTCTGGACACCGAGGTGGCTGCGCTGCAGGGAGGTGTGGCGCAGTTTCTGGTTTCTCACGACAATGGTCACTCTGAGCTTCATCATCCTGTTTTGCACCATCTTCTTCCCCATCTACATCCTGGGCCGGGGGCCCTGAATccaggggggagggggcacaCTAAAATGCCCACCTGCCTATCACCAGCACAGGCATCCACTGAACTTTCGCCCCTTCTCCCCAATCTCATGGAATTAATATAGTTCTCCTCTGTGACATAGGAGGACAGCTGGGGTGTTGGAGTCTGCTCTCCCTCCCAGCTCCTCTCCTCTCGCTGTGCTTTATCCTGGCCTAGGAGTATTGTTGTACAACTGTGGGAGACGAATGGGAAACTGTATTAGGAGACttgccacaaaaacaaacaaacaaacaaaaaacaagttgtGTGAGAACAGTCCGTAAGCAGTGCTGCTAGTCAAGTATCTGACTTATTGGAGTAAGAACTGCTGCTtcagttattatatatatgagtTCAGTACAACACCTTTGCACTTACTTTAGGTGTGATGAATTACAGATTGTGTTTATCAATCAAATTTGAAAAGCAATGCCGTTCTGAATACTCTTACTGTTCCATTCAGGGAGCTTACGTTCCATGAGGTCTGTCGATTCCTCATCAGTAACCATGGCAaactcatattaaaaaaaaaacaattgtagcAAATAACCTTATTGCTTCAGTGGAGAAGTTGTAAAATATGAAgcagtgtatctgtgtgtaaatgtaatgcCCAGAAAATGCTGATCAAAGTGTCTATACCAATATGCTGGACTGATGCTCGGGGATCCCCTCTTTCCTCCTCCACAGGTGTGTGACCCCAACACGGACAATGCCAACTCTGAAAACTAACCAGAATATGAGGAGAAGGCAGGTCACATTGTGTACTTGTGCTTTTAATATTGAGTGTTAGATAAAGAGTTGGGGGCAGGGTTCTGACTACTGTCATTATTTTCGCTGATGTAAATAACTTTTACAGTCAGCGGACCAGCAGCCAGAGCAGGGGAATGTGTTGACAGCACTTTGGCCTGGAGTGGCAGGTCTGTTTTAAAAGTAACAGCCAGCTTGGAAATTGGAAAGCGTTTCTATcactgcagaaacaaaacaggacTATGATTCTATCTGTACAGTTTACTTCCTGTTTCTACCTATTTTTGGTTGATCTTTTTTAAcatcatttcaataaataaaacctaaaggta

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76896 lncRNA upstream 66560 12582261 ~ 12585656 (+) True G61460
TU76861 lncRNA upstream 145617 12499143 ~ 12506599 (+) False G61435
TU76869 lncRNA upstream 147617 12490997 ~ 12504599 (+) True G61440
TU77051 lncRNA downstream 175229 12829972 ~ 12852064 (+) True G61568
TU77088 lncRNA downstream 343107 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 682253 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 686210 13340953 ~ 13341315 (+) True G61668
TU77194 lncRNA downstream 686736 13341479 ~ 13341699 (+) True G61669
AMCG00020182 mRNA upstream 452 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020176 mRNA upstream 87773 12563160 ~ 12564443 (+) True AMCG00020176
AMCG00020177 mRNA upstream 109955 12535766 ~ 12542261 (+) False AMCG00020177
AMCG00020169 mRNA upstream 170311 12479904 ~ 12481905 (+) True AMCG00020169
AMCG00020173 mRNA upstream 199431 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020187 mRNA downstream 10165 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020191 mRNA downstream 80132 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020192 mRNA downstream 147315 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020206 mRNA downstream 594014 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020213 mRNA downstream 648667 13303410 ~ 13330177 (+) True AMCG00020213
TU76948 other upstream 32399 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 114464 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 114464 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 2864164 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6466132 6182712 ~ 6186084 (+) False AMCG00020000
TU77200 other downstream 694934 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1178427 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 1208734 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 1293683 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1813057 14467800 ~ 14469300 (+) True AMCG00020281

Expression Profile