RNA id: AMCG00020207


Basic Information

Item Value
RNA id AMCG00020207
length 6239
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00020207
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13255533 ~ 13273396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCACAGCGGAGGTGATGGGGGAGGTGGGCCGGCTGTACAAGCAGCAGTACAGCGTGGCACTCTTCAACAGCGTGCCTCTGGAGGATAAGTCCATATTCTCAGGTCTGCTCTTCCAGTTTCTGGAGGAGAACAAGAAATGGCGGAACAGATTCTTCTTTGTGCCGGACTCCTATGTCATCACCTACTATGAGACCCGGCTGGCCTACGAGAGAGGGATACAACCCAAGGGAACCATCAGCTGTGCTGGGTACAAAGTGCTGACTGCTATGGAGCAGTACACCGAACTGATCAACAGCAGCCTGCCAGGTCTGAAGGTGAAGGCGGGCAGCTCCCCCTTCCTGAAGTGTGCCACCCAGTTTCCCATCATCCTCTGGCACCCATACGCACGGCACTATTACTTCTGCGTGATGACGGAGAAGGAGCAGCAGAAGTGGTACGCTGTGTTCCAGGACTGCGTCCGACATGCCAACAACGGGCTGTCGGAGGAGTGCAAGGTTCAGACACCCGCCTTTACAGACGCTGTGCGGCTCTACCGGCAGGCCAAGGACCAGTATGGCACGTGGGATATGATGTGTGGAGATGCCACACAGatCTCTGATGCAGTGTACTCTATGGTGCAGAATCAGGCGAATGCTCAGTACACCGCGGTGCTGCAGCTGTGCGAGGCAGAGCGCCCCCCGCTGGAGGCCTCCATCCGCACAGACATGGACCAGATCATCACCTCCAAGGAGCATGTGGCCAACAAGATCCGGGCCCTGGTGCTGCCGCGGGCCGAGCAGCTGCTGAAGCTCAGTGTGCAGCCATATGTGTCGTCCATCCTGGATGCGCTGATGGAGCCCACGAGCCGGGGCTTCGCCGAGCACATGGAGAAGGCGTCCATGCTGGCGTTCCACCCGGTGAAGATGCAGAGCTGCTATGAGAAAATGGAGGAGCTGAAGTTGGAGGGGCTGCAGCAGCGCTTCGATGTGTCCAGCCCCTCAGTGTTCATGCAGAGAGCCCAGATCCTCATGAGAGAGCAAATGGACAATGCCATGTACACCTTCGAGCAGCTGCTGCACCAGAGCCTGGAGAGCCAGGGGGGGGAGGAACTGTGCAAGAGCATCCAGCGCTGCCAGGAGAGAGTCCTCAAGAAATATGACTATGACAGCAGCACTGTGCGCAAGAAGTTCTTCAGAGAGGCTTTGCTGCAGATCATCATCCCCTACATGCTGAAGCAGCTCTCCCCCACCTGCAAGCCTGATTTCGCTCACTTCCAGGAGCTGATTTTCGAGGACTTCTCTAAGTATATCCTGCTGGAGAACATTTTTGAGGAGGTGGTGCTGCAGTCTGTGATGAAGGACATTATGCAGGCGGTGAAGGAGGCGGCAGTGCAGAGGAGGCACAACTTGTATCGCGACAGCATCGTCCTGACCAACAGTGACCCCAACCTGCACCTGCTGGCCGAGGGGTCGTCCATCGACTGGGGGGCGGAGTTCGCGGCGGAAGAGGAGGCGGCGGGGCATGGCAGCGAACATGGCCGCAGGAGGCGTGGCAAGCAGGTGGTGTCCATGATCCAGCTGGAGGGTACTGGGCTGCCCAATGAGTCCTGCATGGAGGTGCCCGGGGTGGAGGGCATCCCGGAGGAGCAGGAAATGGGGCCACAGAGTGGAGGTGGGGTTCCAAGCGAGGACACCGAGCACCCCAAGTCCCCCGACTGTCTGCACGAGATCCGCAACCTCATCAGCCCTAAAGTGGAGGTACAGGTGTCCTTGCTGAGCGCTGACGTCCCTCATCTCGCCAATGGAAACCTGCTGCAGGAAGCCACGGATGGCGCCGTGCCGCCCACCAAGTCCCCAGTCCAGAAAGTGGCAAAGACCGAACCACTGGTGAAGGAGGTGGTGCAGGAAGTGGCCCAGAGCATACCATCTGCAGAGAGTGTGGCACAGGAGCATGAGGCAACAGTACCACCCAGTCAGgaacaagaacaacagcaacaggagaaagagagggagagagaggagtccGCTGAGGTGTTGGTAGACTCCCCTGCCGAGTTGTCACAGCCTGCCCCTGCCGATTCCAGCTCCTCCCACCATCACCACGATGACAGCGAATTCCAGTCCCCCGCCAGCGTGGAGGTGGAGGAACAGGCTCAGACAGTCAGCAAAGCCCCTCAGGGGGCGGGAGATACCATTGTGGACCCAGCCAATGTGGAAGTGACACTGGAGCCCAAGGAAGTGGAGACCGGAGCGGAGGATTCTGGGAAAGGGAGTCCGCCGGAGTGCGAGCCAGTGCAGCCAACCACCATTTAAGACGAGCAACATTAACGAGAGGAAAGGATAACAGACGAAGAAATGgaggaataaaacaattaaatgctttatttttttgtttagatttttttaaggcaaatgagcaggaaagaaaggaaaagaggaaaggtttattctattttttatgcatttttattaatcgCAGAGTGACGTTCTGGAGGGTCAACTTACAGATGGATGAATTGGTTTCCGTTTCCGTTTTTCTcgttaggtttttttttccttcctctttttttaatcattataattattttattaacagaaatCACTTTGACCCTTGCTTCAGTGCAGCAGGATCCACTCTCCTATTCTCCTAGGCTCCCCCGGGGGGGGTTTGTGTAAGCAGAGCTGACTTGAGGAGAGgaagttttacttttttttttttttttttttcttttatagcaCTATACACTATATACCCCTCGATCTTTTCTCCTGCTGTTCAGGGTGATGCGAGTGGCAGAGCCCGCCTGGCCGATACCAGCAGACCAGGAATGCATTGCAGTGCAGTGGAGTgtgaccagagagagagactaataTGGACAACACACAGGTCACCTtcctcctttctccctctcttgctcCTGTTTCTCCTACCTTGCCTGTTGTCACTCAGCTGGAATGGGACACTATCAGGAAGAGATGTGTGCGTGAGTCCTGCGAGGGGGGCTTTCCTGCCTCCTGCTGGGTGGTGGCACTGGGTGGTCGCTGCCTGCCTGTCCCAGCAGCTGTGCTCCAGAGGACACTGTTCCGATGTAAGATGATTATTTTAACCCcaacctgtctgtctgcctgcctgcctggtTGCTCTGTCTGCCAAACGACGCTCCCAGGCGGGGGAGAGGCGTGCAGGAGCCTGTCCGCACACCGGCGGTGACTCGGGCCACCAGGGGTGCAGAAGGAgaagcaaaatgaatagtttcaattttttttttttttcttttaagaaaatgGATCTGTCTATACTGTAACAGTCAGTAGGATTATAGTTGGGAGGGTAACTGTGCACCATGACAACTGACTCCACGGCCCCTCCGATGCACTAACACGGCGGGGCGCAGCAGGGTTAGGGGAGTGCCGGTGGACCCTGGGGGAGTGTAACACTAACACGCTATAGTGCATGTGGTGTCACTGTGTAATGGAACCTGTCACTGGTGAAATGCTACGTGTACCTTGGGAGACCGGGCTCGGTTACCCAAATGATTACAGAATAgactgggtgggggggtggaagaAGGAGATTGTCTCCTcctgttatgatgatgatgatgatgccaAGGCCCGGGCAGTGGGGATCCTCGGTGTGTCCGTGCAGCCGAGAGCTGGAGGAGCGTGTGCTGGGCTGTGTGCTGGGCTGATGCATTCACATCTCTGCCAACAGAGggccttttgctttttttctttttcaacttGGTGTACAGTGTTTACCCACcatgggagtttttttttttttttttgggggggtccCCAACCCCTCTCAAACCCTCAGACGTTGTGTAAATTTATGAAGCAAGATTGCAAAAACCTTTTTTGTGCTGATTTTTTGCAGACGTATATTTACATCTTAGCTTTGCTCACTTGAATCACTtggtgggaggtggggggtctGTTTATCAACAGCTAGATCAAGGATTAAAAACACTAGTGACCAGGGCACCTCCTAGACCAGAAACCAGGCATCTGTTTGCACAAAACATGTTCACCCTTCAGTATATTAATGACCAACCACTTGTGGTGTGGGGGTTTAAGGATTTCATCACATTAAGCTGGTATCTTCTATCACTCTTACAAAGAACACTTGGGGAGAGGCACACGGAATATGTAAATTAAGGGGATTTCAATGCAACTGACCGATTTCATCCGTGCTCACTCTTCCTGCAGATTTCACACTAACGCACTCTGAGAGCTTCACCATTCCTGCTTCTTAAAAGCCTTATGTATGTGGGCTATTGATTCCCAGGTGCTACCCGGGGATGCGAGTCGCCCACGATCTGCTCCTCACAGGGCTGCTGGGTTTTGATGGGACAGTTCAAAActaatttttaaatttgtattttaataagatcAATTGATATTTGTGTGTTCATGTGCATTGATGcatatcatttttttccttgttcttTTCCTTCCTGAGAAACTGTCTAATAGGGACCAGTGGCTCTAGAATTGCTCCATGACTTTCTgttctggggggaaaaaaaacataccaatcCAACAATCGTGTGGCGCCGATGTGTTAGGTGTCCTGGGAATCTGTCTGCCATGCTCTCCTGCAGTCCAGTGAGCAGTGTAGCCCAGCTTGACTAACAGGCTGTGCAATGGTACCTGGTGCTGTGCATTCTGGGACAGCATTGCTTGAACAGTCTGCCGATCTGCCAGCGTGCAAGTGTGAAGCCCTGCTGTAGCTTTCGGTTGGTCAGGTGTGGTCGGTCGTTTGTTTGCGCTAGTTTGACcaaaccccccccctcccccctttttCTCATAGGCAGCGATTGGGAGTGGTAGGGATTTGGGTCTTTGTTAGTTGGTAGCCACAGTTTGTGTTCTTATGAAGAGGGTATCATGACAGGTTCATTAGAAAGTCAGGTGGTAAGTGTCCTGTCGTCAGTGCACAGTTCCTTGatgctgtagtttttttttttttacagactggtgggcagagagagagcgagggaggtgtgtcagtcagtgggTTTTAAGGGTGTTGCAGCTTTGTAGAGTGTGGGTGTCCCATTTGGTGAGCAGCTGGTACATTGATCCTGATGAGGCTCCCGGATACACTCTGTGCTGCAGCGCCTCTGGCAGCGACCGTGATGGTGACAGTGGCACAGCTCGCACCTATCTGAGCCTGCCTTTATCTGTGCTTCTGGGTAACAGGGGTGGCTTTGTGTAGAAATTAAAGTTTTGcaaatgtgtggttttgtttgttttggagcCCAGAGATCCTGATTATCCTTCACACGCAGATTGCCTTCCAAATTCGGCCTGGCCAGGTCTTCAGATAGAACTGTATAGAAGTCCTCGACAGTTTCCAATTTCGAAATACTGAAATCTGAAATACGGTGTCTGAAGCAGCGTGATGTGTGGGCCTCGCAGTGCAGGCCCGAGGACAGAGTGGGGGAAGGGTCTTTCATGGAAGGAATGGGGCCTGAGAGTGTTTATCACGATTAGGACGATTGTTGTTATCGTCCactaaaattaaaaccacagcCTGAGTGGAGTGGCTCAGGGTTCAGAGTGCTGGCTAGTGAAGGACGGACAGGGAAAGGTGTCCATAGAGCTTAATTGAAATGCTGAGTAATTGAGTCCCGTTTTCTCGGCCTTCTCATCTGGCTGTGTTGGTTGTCCTGAGCGGTAGGGCAGTGCTGTATCTGTGGAGCATTATCGGCAAGGACCAGCATGCTGTGCGCTACACAGTATACCTGGTTCTCTATACAGTCCTCAGTGTGTGCCCGTGTTATGCCTGTGAATATCATGCAATTGCTGATCTCGCACACGGGCCAGATTCCAGTGCTTTATTGTGAGAAGAGACCATGTACAGAAaatgtggggtggggggtggagaggAGCACTTCTAGAGCAACTGACGCACTCAAACCTtggcttttctgtttctgtccctTACCGCCTCCGCAGCTGCTCCGTGGCCCTGGTTCTGTTCCGTACACCAGCCTCCCTGCAGGTTGTCATTGTAGTCTGTtacctttatttattacagtgtaATTTCATGCTACATTTAGCATTCCTGCATTTTCTGCACTGTCATTCTtttccctatatatatatttttttatttttggagattttttttttttctttgagtgCTCAAGTTCCCcttgaaaatactttattaaatatgCTACACAAATatacttataaataataaattgttatGGATTAAATGAAGTTGGTTGGtgttatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 247867 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 450100 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 512096 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 671785 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 756107 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 63620 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 173606 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 305013 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 477688 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 515995 13789391 ~ 13792931 (-) True G61920
AMCG00020211 mRNA downstream 7905 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020209 mRNA downstream 20137 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020212 mRNA downstream 31021 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020208 mRNA downstream 50544 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020210 mRNA downstream 75347 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020214 mRNA upstream 65157 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020215 mRNA upstream 70832 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020216 mRNA upstream 95252 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020221 mRNA upstream 126718 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020219 mRNA upstream 135309 13408705 ~ 13427411 (-) True AMCG00020219
TU77151 other downstream 31023 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 257310 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 745596 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 758793 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 762968 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 322122 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 390691 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 531624 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 531624 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 856282 14129678 ~ 14131569 (-) True G62011

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060451 True 3003 mRNA 0.49 15 NC_007116.7 28917841 ~ 28970059 (-)