RNA id: AMCG00020211


Basic Information

Item Value
RNA id AMCG00020211
length 2592
RNA type mRNA
GC content 0.62
exon number 20
gene id AMCG00020211
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13237915 ~ 13247628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGTATTTGAGAAGTGGGTCCTGCTCGTCTCCGCGCTGTGCACCGTCTGCCCGCTGCAGGTCCGGTCCATGTCGAAGGAGGAGAAGTCGAAAATCCGGGACCAGATTGTGGAGATGTTCGATCATGCCTACGGCAGCTACATGaaATACGCTTACCCAGCGGACGAGCTCATGCCGCTGAGCTGCAGGGGGAGGGTGCGTGGGCTGGAGCCAAACCGTGGAGACATTGACGACTCGCTTGGCAAGTTCTCTCTCACCCTCATCGACACCCTGGACACATTAGTGgTTTTGAATAAGCTGGAGGAGTTTGAGGCGGGGGTGCGTCGAGTGGTGCAGGAGGTGCGCCTGGACAATGACGTTGTGGTCTCCGTGTTCGAGACCAACATCCGCGTAGGCCTGCTGGGGGCGCACGTGATGGCAGACATGCTGCGGAAGCGGGCAGAGGGGCACATGGCCTGGTACCGGGACGAGCTGCTGCACATGGCCCGGGAGTTGGGGCACCGCCTGCTGCCCGCTTTCAACACCACCAGCGGCCTGCCGTACCCTCGGGTGAACCTGCGCCACGGGGTCCTCAGCCCGCTGTCCCGCACAGGCACGGAGTCGGACACCTGCACGGCCTGCGCAGGGACCATGATCCTGGAGTTCGCAGCGCTCAGCCGGCTATCAGGGGAGAGCGTGTTCGAGGAACAAGCACGCAGGGCTCTGGATGTGCTGTGGGAGAAGAGACAGAGGGGCAGTGACCTCGTGGGCACCGTCATCAACATCCACAATGGGGACTGGGTCCGCAGGGaCAGTGGAGTGGGAGCAGGCATTGACTCGTACTACGAGTACCTGATGAAGGCCTACATCCTGCTGGGGGATGATGTGTACCTGGAGAGATTCAACACTCACTACGCTGCCATCATGAAGTACATCAGCCAGCCCCCCCTGCTGCTCAGCGTCCACATGCACAACCCCACGGTCAGCGTGCGCAGCTGGATGGACTCTCTGCTCGCCTTTTTCCCCGGATTGCAGgtgcTGAGGGGGGATCTGAAGCCTGCTATAGAGACGCACGAGATGCTGTACCAAGTCACCAAGCAGCACAAGTTCCTGCCGGAGGCCTTCACCACAGAGTTCAGAGTTCACTGGGGCCAGCACCCCCTCAGGCCGGAGTTTGCAGAGAGCACCTACTTCCTGTACAAGAAGCTGAACACTCACGCTCGTGTCCCCTGTGGCTTTGCTGCCGTGCAGGACGTCCGCACCGGCACACATGAGGACAGGATGGACTCGTTCTTCCTGGCCGAGATGTTCAAATACCTGTATCTGCTGTTCTCGGAAAAGAGTGAGCTGCCCATTGACATCGACCACTACGTCTTCACCACTGAGGCCCACCTGCTGCCCGTGTCCTTGTCCACCGCCCTGTCGCCCTGCCGCCACAACCGCACGAATGGCCCCCCTGCTGTGGAGGACGACCTGTTCACCCACTCCTGCCCCAGCGCCCAGACTCTCTTCCCCAACAACCCCTCCTTCGCCAAGACCATCCGTGACAGCTACAAATACCTCACAGGGGCCGGGGCTGCACCGCCCTCTTCCCCGATCAGggGGATCGAGTTGCCCTTGCATGACAATGGCATGGAGCCGATGGAATTCCTGAAGAGCATGGGCATCTCCCTGACCCCACTGAGTGACGGCAGCGTGGGGGTCAGCAGCTCAGGCTCGCCCCTGGTGAGTACAGCACCTCCACCCAGTACCGCCCAGCCTCCACATGAGCCCTCCTCCTCTCAGAATGGGGTGTACCGGGTGAAGCTGATCGCGGAGGTGACcaccgaggaggaggaggaggcagtggTGCCACTTGCTGTGCAGATCATCTCCCCCCCATTCCTGGGCAGGACGGTGTTGACCGCTGGACCCGCCAAGTTTGGGATGGACCTCACCAAGCAGGAGCATGGGGTGAAGGGCAGTGTGGTACGTAGCGTGCCGTTCAGTGCGTGCAGTGTGTTGGAGAACGCGGTGGAGCTGCACGGCCGTGTGGGTGTGGCCCTGCGCGGGGACTGCATGTTCGCGGCCAAGGCTCGCCACCACCgcgagggcagcagcagtgaagaGACACCGCTGTTCCAGATGGTGGGGGACGGCGGGGGGACAGAGGACATCACTGTGCCGCTGCTTTTTCTGTTCAGGCGTGAGGGCGCCATACTGCTGGATGCGCTGGACACTCACCGCAATGTGGACGCGGGGAAGGCAGAGAGGCCGCTTGGAATGAACATCAAGATCCGGCTGGCGGACGAGAGTGATCTGATGGCAGAGGGGCTGCAGGGTGGGCCAGGCAAGAGCACCACCATCGAGCTGCTGCTGGAGACGGACGAGGAGGAGCGGGTGCCAGCACCGCTGGGCCACTGCTCCCCCCCTGAGGAGGCTCCCGCAAAACAGGGGCCCGAGGAGACCCCCTCCCTGCTCAGCAGCTCGGACAGTGACACCCAGAACCCACAGGGGTCACAGCTGGGCGCAAAGCAACAGCAGGTATCAAGTACAGACAGACCAACGGACGTGCCATACCACCAgccttcctcctcttcctcctcacagGTCTCTGACCCTGACCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 230249 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 432482 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 494478 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 654167 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 738489 12493801 ~ 12499426 (-) True G61477
TU77227 lncRNA upstream 89388 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 199374 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 330781 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 503456 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 541763 13789391 ~ 13792931 (-) True G61920
AMCG00020209 mRNA downstream 2519 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020212 mRNA downstream 13403 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020208 mRNA downstream 32926 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020210 mRNA downstream 57729 13170986 ~ 13180186 (-) True AMCG00020210
AMCG00020205 mRNA downstream 74269 13139172 ~ 13163646 (-) True AMCG00020205
AMCG00020207 mRNA upstream 7905 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020214 mRNA upstream 90925 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020215 mRNA upstream 96600 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020216 mRNA upstream 121020 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020221 mRNA upstream 152486 13400114 ~ 13403240 (-) True AMCG00020221
TU77151 other downstream 13405 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 239692 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 727978 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 741175 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 745350 12490698 ~ 12492565 (-) False AMCG00020180
TU77373 other upstream 347890 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 416459 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 557392 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 557392 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 882050 14129678 ~ 14131569 (-) True G62011

Expression Profile