RNA id: AMCG00020253


Basic Information

Item Value
RNA id AMCG00020253
length 2183
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00020253
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13793197 ~ 13797273 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggacctacacaatattaggcaggtggtcataatgttatggctgattggtgtataattattataataataacaataatttctAAGCAGAAACCCTTTGTAGAGTAAGTTACAATATTTTCAGGCAAGTTTTCACCACTTAAAAAATTTGTTGTTTCTTCTGTTCCCCTCCGTTTCCAAatactgtctctgtgtctgtgtctatgtcTCAGTCTCTCccttttaaatagaaaaaaagctGAATTGCCATAAAAAGGGTACACTtgtcctctctcttcttcactCACCCCCAGGTGCAGTGACAGACAGGATGTCAGGATGGACCCGATACCCCCCCCACTCCCGGACagcctggtcctggagatcctgctgctgctgcccccccGTGCGGTGCTGAGGGCGGGGCAGGTGTGCCGGCAGTGGCTGGCAGTGTCGCGGGACGAGTTCCTGTGGAGGGATCTGTTCTATCGCTACTATCACATCCCCCGCTGCATCCCTCGACACCCAGCGCCTGGCCTCCTGCTCCAAGGACTGCACTGTCAAGGTACGCACAAGGCAGACCCAGCTGTGGCAGTGGACATGGCATTAGTGGTGATATGGCGCAGTGAGCCAGAGATCTCCCTGCTGCACAgctccagtatgcggcagtttAACTGGGGCTATACCCAGTTCTCCCAGTTCAACGCGGATGACACCCTGCTGCTGGTGTCTGGGGTGTACATTGGTCCCCACCACACCTCCTCTGGGGAGATCGCCGTCATCAACCTGGGTTCGTccAACGTGGAGTCTGAGAATGTGAATGTGGTGAAGCGGCTGTTTAAGATCCAAAACCTGAACGCCAGCACTGTGCGCACCGTCATGGTGGCCGACTGCCGACGCCATGACACACCAGACCTGCTGTTGGACTATGGCGCTCAGGCAGCCCAGAACCGGCCCGCTCCGCTCGTCTTCGACCTGGGCGGTGACAGCGGGGAGGAGGACGAGGATGAATATAtggagggggagGGTCTGTGCAGCACGGAGTTGTCTGAGCGGCAGCTGGAGTCAAAGGTGGCCCAATTCCTGGGGAAGAAGCACACACGCACCCCCGCACCCCCGCCCCTCCCTAGCCAGGACCCGGCTGAGCATAAGATCTACCTGCTGTTCACCATGGGCAGCCTGACCTACTCCCCCCACCAGATAGGGATCAAGCGGATCCTGCCAGAGCAGATGACGACGTGCGGTCCGGTGCTGGGTGAGGAGCGTGGGACGGATGAGTTCTTTGACCCGCTGGACCACGTGATAGACATCCACGGACACATCATCGGCATGGGACTGTCTCCCGACCACCgGTACTTGTATGTGAACAGCCGGGCGTGGCCAGCGGGATATGTGATCTCGGACCCAATGTCACCGCCGCCCATTGCAGAGGAGATCGACCTGCACGTGATCGACCTGAAGACGCTGCGGGAGGAGCGGCGCAGCCTGCGGGCCCATCGTGCCTTCACCCCCAACGACGAATGCTTCTTCATCTTTCTGGACGTGAGCCGTGACTATGTGGccagCGGTGCGGAGGACAAGCACGGCTACATCTGGGACCGGCACTACAACATCTGTGTGGCCCGCCTGCAGCATGATGACGTGGTCAACTCCGTGGCCTTCAGCCCAGCCGACCAGGAGCTGCTGCTGACCGCCAGTGACGACGGCACGGTCAAGGTGTGGCGCTCCCCCCGCATGGTCCGGGTAGCCCAGAGTGCCCGGCCACGCCTGCGCAGGCCCCGCATGCCCTGGCTGTACAAGGACACAGTGGCCAGCGCTGACCCTGAAGCCAACACTGACACTAAGTCCAGctagagactgtgtgtgtgggacAGGAAGTTGTGGGGcacgtgtttttatttttttggctgtACTGAGTACACTCCCTATCAGgcagagagtgagtgagagagcgagcgagcgagcatTAAAAAAgggagagtctgtgtgtgtatgaatgtgatgaatgtatgtgtttgtgtgtctgtctatccaTACATGCGTGTGAGAATatcttgtgtgtctgtctgtctgattttgtgtgtgttgctgtctgtctgtcctcccTGTGGACTCTCTAGGCTCTCCCTCCCTGACTGCTTGTCTACCCTGCGCCTGGATTGCTTTcctgttcattttgtattttaaataaaactattcaaaataaa

Function

GO:

id name namespace
GO:0044267 cellular protein metabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10263 FBXW5; F-box and WD-40 domain protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77532 lncRNA downstream 266 13789391 ~ 13792931 (-) True G61920
TU77451 lncRNA downstream 41899 13751084 ~ 13751298 (-) True G61872
TU77364 lncRNA downstream 139818 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 343135 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 455096 13337016 ~ 13338101 (-) True G61696
TU77540 lncRNA upstream 14698 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 14698 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 24475 13821748 ~ 13823540 (-) True G61927
TU77551 lncRNA upstream 27416 13824689 ~ 13828265 (-) False AMCG00020249
TU77567 lncRNA upstream 115899 13913172 ~ 13914166 (-) True G61943
AMCG00020234 mRNA downstream 26014 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020239 mRNA downstream 47764 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020233 mRNA downstream 62713 13723015 ~ 13730484 (-) True AMCG00020233
AMCG00020238 mRNA downstream 70249 13719430 ~ 13722948 (-) True AMCG00020238
AMCG00020240 mRNA downstream 78006 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020248 mRNA upstream 3320 13800593 ~ 13804321 (-) True AMCG00020248
AMCG00020252 mRNA upstream 9482 13806755 ~ 13808306 (-) False AMCG00020252
AMCG00020256 mRNA upstream 14140 13811413 ~ 13812141 (-) True AMCG00020256
AMCG00020250 mRNA upstream 16949 13814222 ~ 13820396 (-) True AMCG00020250
AMCG00020249 mRNA upstream 28755 13826028 ~ 13834729 (-) True AMCG00020249
TU77394 other downstream 127612 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 196280 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 568687 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 794974 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1283260 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 7747 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 7747 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 332405 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 533249 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2301627 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile