RNA id: AMCG00020468


Basic Information

Item Value
RNA id AMCG00020468
length 3913
RNA type mRNA
GC content 0.38
exon number 12
gene id AMCG00020468
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22031125 ~ 22047368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGAGTAGGACAATAACAGGAAGCCTGCCAGTGGAAATAGGCTGAACCCCAGCCTCAGACAGCATTGGAAGTCTACACTCCTGTTAGGAGCTCAGACAGGTTTATATTTGTGAGATTGCTACTACAACACAATTTTCCTTCTTCCTTATCAAggatataatttgttttgcctGTATTCCTgtggaagaagaaaataatatacattactCTTTCCCATCAGAGCACCAGAGGTGGAAGATGGGTATTTTAATGTGGCTGGTGTTTTCTGCCTTAACCCAAACACTTGCCACATTCGAAACTGAACACTCTCAAAAAGATGCATCATTCACTCAGAACACAGTTCTGCATCGACATAAAAGAGAATGGGAGTGGAATTCAATATTTGTTCATGAAGAACAAAAGATTGATCATCCAGTAAAGATCGGAAAGctaAAATCAACCAAGGCCACCAAAAATTCTATATTTGTTATTGATGGAATTGGAGCAAACACTACATTTGTAGTTGATTCACATGGTGATGTTTTTGTCAAAAAGACTTTGGATCgtgaaaaacaaagcatctATAATCTCACAGCTAAAGTTATTGATTCTCAAACGAAGCAGCTGCTGGAGGCGGAAGAAAAGTTCTATATAAAAGTCATGGACATTAATGACAATGTACCAACGTTTACACATAGTCAATATAATGGTTCTGTTCCCGAAAGATCTAATGGAGgaaCAAGTGTGTTGAAAGTAACTGCCACTGACTTAGATGATCCTACAACTGAATATGGCAAAGTGGTGTATGACCTCCTGGAGGGAAAGGAATCATTCAATATTAATACTGAAACAGgacTCATTACTACAAAAACTTTACACGATTTCACGATCAATTTAGACCGTGAGAAAAAGGATACCTATAAATTGATTGTTCAGGCAAAGGATACACCAAGCTTTAAAACTGGTGGTACCAGTACAGTCACTGTAATTGTTACTCTGGAAGACATTAATGACAACCTGGCAACATTCACCCAAGGAAATTACAATTTTGACGTGAAAGAAAGTGAAAGCATTGGGTTCATTATTGGAAGGATGAAGACTGAAGACAAGGATGAATTGCAGAACAAAAACCCAATTTTCACAATTAAGAATCCAGACGATGGGAGTATTTTCAACGTAAAACAAGATTTCCAAAAATTTGGAGTCATAACTTTGCTGAAGgcACTTGATTTTGAAACTATTCAGAAATATGAGTTTGATGTGGAGATAGATGAAGCAACAAGTATGCCAGCAGATAATGAGAAGGAACTCAAAAACAGCAAAGCGCATGTAACAATCAAAGTGCTTGATGTCAACGAACCTCCCGTCTTCAAGCAACCAAGCTATAATTTCACTATTGAGGAGAATGTTAATATCGGCACTTCGATTGGATCTGTCTCAGCACATGATCCTGATAAAGCAAAAAATACTATAAGGTACAGCATCAATGAAGACAGTCCACTCAGAATTGATCCAACTTCCGGAACCCTGTATACCGCTAAGGAACTGGATCGAGAAATGAATCACTTGTACGCAATCCCAGTAACAGCAGCAGAAACTGACCATGAAGGTCTAAAATCCCAGGTTATTGTAAATTTGAAAGTTTCTGATGTGAACGACAATGATCCCGAACTGGGTGAACCctattctgtttttgtgtgtgaaaatgatgGACCTGGCACGGTAATCCAGAGAATTTATGCAGCTGACAAAGATGAAATAACACCTGGATCAAAAGCCAGCTTTGCTTTGGCGAGCCCCAATGCCAACTTTTCACTAGTTGATAATCATGaTGGCTCAGCTAATATTAGTGTAAAGCAAGGAGGCTTTACATTCGAAGACACTAAGGAATACATTATCAATATTGTGATTTCGGATAATGGCCAGCCCTCTCGCAGCAGCACCATCCTCCTGCCAATATCAGTTTGCAAATGTGAAGAAAACAGGATAAATTATCATTGCATGAAACCCTATGCACAGACTGGAGTCAGTGTCCACGCTGTCACTGCCATTCTCCTCTGCATTCTGACCATTTTAGTCATTGTGATACTGATTGTCATGAGGAAGAGATACAGAAAAGATACATTGGCAACTCTGGGGAAGAGCAGTGGCGAAATCCATGAGCAGCTGGTGACCTATGATGAAGAAGGGGGTGGAGAAATGGACACCAATGGCTATGATGTTACAGTTTTGAATTCTGCCCGAAACAACAGCATTATGCCAGGGCCTTGCTTGTATGCAACAGTCCAGAAGCCAGCAGGCAAGGCAGACATGGGCATCATGATAGAAGTAAAGAAGGACGAAGCGGACCACGACAGGGATGCGATTCCTTATGATACTCTCCACATATATGGCTACGAGGGTCCCGAGTCACTGGCAGGAAGTCTCAGTTCCTTGGAAACCTCCTCTTCAGACTCCAACCTGGACTATGACTTCTTAAATGACTGGGGACCCCGGTTCAAAACCCTAGCCGAACTCTATGGAGTAGATGCATCTGAGGACGACTATGAATATTAAGTCCATATTAATGCCAAAAAAAGGGAGGTGTTTAGGATTTTCTTTCGAATAAAATCTTTCTATTTAAAccatgaataataattttattcatGATACTCATTGATAAGGGCCATTCATGTGTGTgccaataattatttttaatattcatagaATACCATCATTTCCTGTTGAATCGTATTGGTGTATTGTGAAGGGtgttattttggttgtttttttatatttttttaataatgcttgTTTTTATCACAGTCTATTTTTACAGACTAACTCATtgaaaacattgattttattcatattcattaccaattacataattaacaCCTGAAGTGCATATTCAAGACAATCTGTGGTATTTATGCTGGTGCACAATATACAGGAAGGAATTCACTGAATTACTTGCATATCTGAATCAAGCTTGTCTGCActgatattttctgtattttattttttctttaattttcaaGTTGGGACTGAGGAAGTTGGACTTGGCTGGGacagatatatttttacatCTAATGTAATAAGTATTTTATAACTAAAATAGAAATGATAATTCATCTGCCTGAACAATCGGTGTAGAAAGTGGTTCTGTTTTAATAGAAGAACTTTGTGGTGgtgcaaaacaaactaataataaataagctcACACAGTGAAAGTATTGTCTCTAACATAGCATTGTATTAAGTTTCCACTGCTGTGAAGTAAGTTTAATTATAAAATCTGAGAGCGGTCAATCagcatttgaaatgtacagaCAAACTATGATTTAAAACAGGAACAAATCACAATTGCCAAGGGATCTTGGCAGGAAGCATTTCTAGGAGAACTTTGAAAGAGTCTGAGTTTTTGTTTGACAGATTTCTTTGACGCATAATTTGTAATAGGATAATATGACTGTCCCCAAGGGCAGTCATAACAAAAGTATTACAGTTAATCCAGGAAACatcaaaaatacacatatagaCAATGTGAGTATATATGTAACAGACATATGAGCTATATAACTTTAAcctttaatctttaatcttgAGTTTATAGTGAGCGAGTATATGCAGTTAATGAAATAATCTATACTCACAAAATTGTTATATATCATTCCAGAATATTAAAGAATTTGCATACTGTTTCTGGAGGTCATTCTTGAAAGTGGGTCACCCATTCTTTGTTATAAGACGGTCATGTTTGAATCTAAGATTTAACAAGGAAGttttcagcctttttttttttttctatttgcatACAATACGTGGAAGCCTACTTACTGTTTTCCTGTTCAGCTCAAGTGACTCCAGTGCCTAAACTTCATTCCCCCAACTCCTTATTTCCACAAATCCAGTCCAGTTCTCCATCTtctcaccccaccccccccccccccc

Function

GO: NA

KEGG:

id description
K06533 CDH5, CD144; cadherin 5, type 2, VE-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79426 lncRNA upstream 391469 21638996 ~ 21639656 (+) True G63477
TU79397 lncRNA upstream 946587 21084117 ~ 21084538 (+) True G63448
TU79378 lncRNA upstream 1450692 20563817 ~ 20580433 (+) True G63433
TU79295 lncRNA upstream 1717853 20311699 ~ 20313272 (+) True G63360
TU79265 lncRNA upstream 1779168 20248832 ~ 20251957 (+) True G63334
TU79529 lncRNA downstream 160340 22207708 ~ 22208031 (+) True G63562
TU79532 lncRNA downstream 304805 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA downstream 306650 22354018 ~ 22354979 (+) True G63589
TU79568 lncRNA downstream 336149 22383517 ~ 22391241 (+) True G63592
TU79791 lncRNA downstream 926510 22973878 ~ 22974091 (+) True G63772
AMCG00020461 mRNA upstream 1358935 20661673 ~ 20672190 (+) True AMCG00020461
AMCG00020460 mRNA upstream 1372873 20634866 ~ 20658252 (+) True AMCG00020460
AMCG00020459 mRNA upstream 1504903 20501491 ~ 20526222 (+) True AMCG00020459
AMCG00020458 mRNA upstream 1541128 20467388 ~ 20489997 (+) True AMCG00020458
AMCG00020444 mRNA upstream 1720436 20300013 ~ 20310689 (+) True AMCG00020444
AMCG00020469 mRNA downstream 46950 22094318 ~ 22097040 (+) True AMCG00020469
AMCG00020467 mRNA downstream 70485 22117853 ~ 22121079 (+) True AMCG00020467
AMCG00020470 mRNA downstream 88224 22135592 ~ 22142198 (+) False AMCG00020470
AMCG00020473 mRNA downstream 143219 22190587 ~ 22197292 (+) True AMCG00020473
AMCG00020474 mRNA downstream 178533 22225901 ~ 22241448 (+) True AMCG00020474
TU79182 other upstream 2394904 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 2430388 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 3697093 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 3959082 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 3969261 18058558 ~ 18061864 (+) True AMCG00020408
TU79495 other downstream 88000 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 311460 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 1023043 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 2004621 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 2004621 24051989 ~ 24055592 (+) True G63939

Expression Profile