RNA id: AMCG00020481


Basic Information

Item Value
RNA id AMCG00020481
length 1509
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00020481
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22334724 ~ 22346329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGCGCTATCTCCGGCGGAGCTCCAGAGGCCGTCCTGTGTACCCTTCCGCTCTCCGTCTCCCGTTGTCGCTTCTGTAATGTCGTCGCGCCACTCTTGGTCACCGATTTTCTCTTCCTCCGCTGAGCTGCCGCTGGCGGGGCCTCACTGTTCTCCCAGCTGGGCTTCCTCAGCGGAGATCTGTATCTGGGCCGCACACGCCAGCTCTATTTCCTGTGAAGCTCCGGAGACCATCTTGTTTACACTCTCGGCAAGCCTCGATGCCGTCATCGCGCCGTTCTTGGTTGCCGATGTCCCCTTCCTCTGCAGGACCCGTTGGCTCTGTGGAGGCCTCCTCCGGCGGAGCCTCGCTGTTGTAGTTCCATCGCTGCGGGATCTCTTCATTTTCACTCTGTCACATTTCGTCAGCTCCTTCAGCTTCTCCTTGTTGCTCCAGCAACTTGCTCTCTGTTCCTGGTCCTTCTTGACGTTCTCCCAGCTGGATTCAACTGCCTCCCGCGGTTGCTGGGCACTGCTCGCCGGTGCAGCAGCTGCCTGCCTTGGGCACTCTTCACCGCCGTTCCGCGGTCCCCGGAGCCCAGTCTCTGGCTCTTCACACCGGTCCGCAGTCCCTGGAGCCCCGTCTCTGGCTCTTCATCTTCCTCCAGCTGGGGCTCGTCGCTGGCGCCCCTTTCAAATTGCACCCGGATTAAACTTGCAGTCAGCTGTGCTCGCCATGGGGAAGGCCAATCAAACGGCTCTCCAGAGCTTCTCAAGGAACTCCATATCGGACTGTATGGGCAACTGGACCATCCTGCTTGACCACAGCCTGAACCACCACAGTTCATCCTCAGAGCTCTCCCCCTGGTCGGGTTTCCGCTGGCTCTCTCTCTTTGCTGCGTGTGCTTCCTGTCCCAGTAATATGGAAGTTGTGAATGGTAAAGGCTGGACCCCCATCCATCAtgctgcatttcaaaataacagcAAGTTGGTGGAAGAGTTTGTCCAGAGCTCTAGACTGCACCTACTGGAAATGACATCAGACCACAAAAACTCTGATGGGCCTGGGAGTGGATATGGCTGCAATACCCAGTATCATGGGGTGGTGGAGGCTGGTGCCCTGGGGGAACATGTGGATCTCTTGGAGTACTTCACCAGTCTGCAGCACCCCAAGCTGGAGGTTTATCAGAGGCTGGTCAAGTTCCTCATCTCATACTGTGCAGAGGAAGCTGTGAAAGCAGGTAGAATTGCCCAAGAAGGCAAGTATGCCGAGGCCCTTTCCTCTGCTGGCCTGCTTCTTGTTCTGCTGAGAGTGATACAGAAGGCCAGAGTGCATGGCAGTGAAGGGACCGAGGAGACCATTGTGATCCCAGCTCTCAACTGTCTGTCCTCTGCAGCCTCAGGCAGCAAGGTTTTTCGGGACAGCATGGGGAAGATGCCACTGACAGAGGGCAATGAGCATGCTCAGAAATGTGTTCTGGAGGGTGGAGGGCTGATGGCACTCATGCACCTCCTAAAGAAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79529 lncRNA upstream 126693 22207708 ~ 22208031 (+) True G63562
TU79426 lncRNA upstream 695068 21638996 ~ 21639656 (+) True G63477
TU79397 lncRNA upstream 1250186 21084117 ~ 21084538 (+) True G63448
TU79378 lncRNA upstream 1754291 20563817 ~ 20580433 (+) True G63433
TU79295 lncRNA upstream 2021452 20311699 ~ 20313272 (+) True G63360
TU79532 lncRNA downstream 5844 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA downstream 7689 22354018 ~ 22354979 (+) True G63589
TU79568 lncRNA downstream 37188 22383517 ~ 22391241 (+) True G63592
TU79791 lncRNA downstream 627549 22973878 ~ 22974091 (+) True G63772
TU79803 lncRNA downstream 707469 23053798 ~ 23058400 (+) False AMCG00020505
AMCG00020479 mRNA upstream 82473 22250662 ~ 22252251 (+) True AMCG00020479
AMCG00020474 mRNA upstream 93276 22225901 ~ 22241448 (+) True AMCG00020474
AMCG00020473 mRNA upstream 137432 22190587 ~ 22197292 (+) True AMCG00020473
AMCG00020470 mRNA upstream 192526 22135592 ~ 22142198 (+) False AMCG00020470
AMCG00020467 mRNA upstream 213645 22117853 ~ 22121079 (+) True AMCG00020467
AMCG00020480 mRNA downstream 25 22346354 ~ 22350406 (+) True AMCG00020480
AMCG00020487 mRNA downstream 9845 22356174 ~ 22409493 (+) True AMCG00020487
AMCG00020484 mRNA downstream 63853 22410182 ~ 22425882 (+) True AMCG00020484
AMCG00020486 mRNA downstream 84207 22430536 ~ 22431810 (+) True AMCG00020486
AMCG00020485 mRNA downstream 121194 22467523 ~ 22473932 (+) True AMCG00020485
TU79495 other upstream 192567 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 2698503 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 2733987 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4000692 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 4262681 18067787 ~ 18072043 (+) True AMCG00020407
TU79558 other downstream 12499 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 724082 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1705660 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1705660 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 2132506 24478835 ~ 24482114 (+) True G64046

Expression Profile