Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00020491 |
| length | 927 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 5 |
| gene id | AMCG00020491 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 22580097 ~ 22582459 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| id | description |
|---|---|
| K20301 | TRAPPC2, TRS20; trafficking protein particle complex subunit 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU79568 | lncRNA | upstream | 188856 | 22383517 ~ 22391241 (+) | True | G63592 |
| TU79532 | lncRNA | upstream | 197606 | 22352173 ~ 22382491 (+) | True | G63564 |
| TU79565 | lncRNA | upstream | 225118 | 22354018 ~ 22354979 (+) | True | G63589 |
| TU79529 | lncRNA | upstream | 372066 | 22207708 ~ 22208031 (+) | True | G63562 |
| TU79426 | lncRNA | upstream | 940441 | 21638996 ~ 21639656 (+) | True | G63477 |
| TU79791 | lncRNA | downstream | 391419 | 22973878 ~ 22974091 (+) | True | G63772 |
| TU79803 | lncRNA | downstream | 471339 | 23053798 ~ 23058400 (+) | False | AMCG00020505 |
| TU79804 | lncRNA | downstream | 485852 | 23068311 ~ 23070149 (+) | True | G63784 |
| TU79809 | lncRNA | downstream | 494442 | 23076901 ~ 23077313 (+) | True | G63787 |
| TU79811 | lncRNA | downstream | 503919 | 23086378 ~ 23086933 (+) | True | G63789 |
| AMCG00020490 | mRNA | upstream | 25883 | 22543800 ~ 22554214 (+) | True | AMCG00020490 |
| AMCG00020485 | mRNA | upstream | 106165 | 22467523 ~ 22473932 (+) | True | AMCG00020485 |
| AMCG00020486 | mRNA | upstream | 148287 | 22430536 ~ 22431810 (+) | True | AMCG00020486 |
| AMCG00020484 | mRNA | upstream | 154215 | 22410182 ~ 22425882 (+) | True | AMCG00020484 |
| AMCG00020487 | mRNA | upstream | 170604 | 22356174 ~ 22409493 (+) | True | AMCG00020487 |
| AMCG00020496 | mRNA | downstream | 131050 | 22713509 ~ 22727236 (+) | True | AMCG00020496 |
| AMCG00020497 | mRNA | downstream | 177219 | 22759678 ~ 22776485 (+) | True | AMCG00020497 |
| AMCG00020499 | mRNA | downstream | 318653 | 22901112 ~ 22908729 (+) | True | AMCG00020499 |
| AMCG00020500 | mRNA | downstream | 326926 | 22909385 ~ 22916833 (+) | True | AMCG00020500 |
| AMCG00020507 | mRNA | downstream | 370983 | 22953442 ~ 22961731 (+) | True | AMCG00020507 |
| TU79558 | other | upstream | 207337 | 22358828 ~ 22372760 (+) | False | AMCG00020487 |
| TU79495 | other | upstream | 437940 | 22135368 ~ 22142157 (+) | True | AMCG00020470 |
| TU79182 | other | upstream | 2943876 | 19631325 ~ 19636221 (+) | True | AMCG00020438 |
| TU79166 | other | upstream | 2979360 | 19597238 ~ 19600737 (+) | False | AMCG00020439 |
| TU78921 | other | upstream | 4246065 | 18332569 ~ 18334032 (+) | True | G63045 |
| TU79808 | other | downstream | 487952 | 23070411 ~ 23074945 (+) | True | G63786 |
| TU79994 | other | downstream | 1469530 | 24051989 ~ 24053877 (+) | False | G63939 |
| TU79996 | other | downstream | 1469530 | 24051989 ~ 24055592 (+) | True | G63939 |
| TU80130 | other | downstream | 1896376 | 24478835 ~ 24482114 (+) | True | G64046 |
| TU80333 | other | downstream | 2491598 | 25074057 ~ 25076690 (+) | True | AMCG00020572 |
