RNA id: AMCG00020492


Basic Information

Item Value
RNA id AMCG00020492
length 9120
RNA type mRNA
GC content 0.50
exon number 50
gene id AMCG00020492
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22474293 ~ 22512944 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTCCGTCCGCAGTGCTGTGTGGCTGCTTCCTGTGGCCGGAGAGGAGGAAGGGCCAGCCCCATGCCTGCCACACTGGTCGTTTTATCAAGGCTCTGTTTGGCACCAGCCTCCTCTTCCTGTTGGTTCACGTCACCTTTCAGATCTGCCTGTACACTGTTCCCAGCCTGGATGATGAGTTGGGGCGGAACTGCAGCTCGTGGGAGACTCTGTCGAGGCACATTGGAGTTTCCAGGCTTCCACATGATGACTTGTGGAGCATTTCACGGCTGCTGGCCCCAGATGTGGGCATCTTCACAGTGTCGCTGGTCACTCTGGTGATTTGTAACAGGCTGCTGAGCAAGAAGAGGAATGTGCAGAAAGTGGACCCCGACTCCAGCCCCCAGGGggaagggagagaaggagagcaggaggaggaggaggaggaggaggaggagggaggagagagggttGATGAGGGTGATGAGGAAGGCAGGACCTCCTCCAGTGAGATGGATGAAAACTTTGTTGATGAGGAGCCGCCCTCCCCAACGCGTGCCACCCTGCTTGCTGCTCGGCTCCGCGCCGCTGCCCACAGCTTCCTGAGAGACCTCGGCAAGGCCCTGGCAATCACCCTGCTGGCACTTGCAGGCATCACACTGCCCTCTGCCTTCTCCGCCATCTACTTCCTGCTGTTCATTGGGGTGTGCACCTGGTGGGCCTGCCACTTCCCCATAAGCCCCCTGGGCTTCAACACCGTGTGTGTGATGGTGGCCTTCTTTACGTCAGGACACCTAGTCTGTCTGTACCTGTACCAGAGCCCCTTCGCCCAGGACATCTTTCCCCCAGCCAGCCTTTGGGCCAGACTCTTTGGGCTGAAGGAAATGATAAAGTATACCAACTGCTCATCCTCCAATGACCTAATCTTGAACAAAGATCATGACTGGCCAGTTTATGTCAACCCTGGGATTCTCTTCCTCCTGTACATCACTGTTGCGACCCTTCTGAAGATGGGAAGCCATGTTTCCAGTGAGAAGAAGGCCAACTTGGAAGCAGAGACTGCCAGGGTGCCACAGCTGGCTAGGGGGGAAGAGATGGAGCTGAAGTCAAGGGGGTCAAAGCGGCAGATCAGTGAAGACGAGACTGAGCGAATGCTTCTGTCAGCCAATGAAACACCAGGATCTGATACAGAGGATTCTGGTGCTCAAGTTGTCAACAGCTCTAGTCATCAGGACCTGGGGCCCAGTGATGTCCCTGGTGGATACAATGGGGATCATCCTCTCCAAGTTGTGGGGAGGATGGTCCTGCGACAGAGCTATATCTGTGCCCTCATTGCAATGATGgtgTGGAGTATCACCTATCATAGCTGGCTGACCTTCGTGCTCCTGCTGTGGGCCTGTGTCATATGGATCCTACGTGCCAGACGACATTTCGCCATGCTGTGCTCCCCCTTCATCTTGCTCTACGGCCTCTCCCTCTGTAGCTTGCAGTACGTCTGGGCCATGGACCTGGAACACGAACTGCCCCAGAATGTAGGAACTATGAGCCTCAAACAGCTAGGACTGAACCGCTCCAAATATGCCTGTCTGCCCCTGGGAGCGATGCTGCTCTACACGCTGACCTTCTGGCTTCTCCTGCATCAGTCTGTGAAGGACAAGTTTACCAGGAAGAAGACTGCCTCCGTACCATTACTGGAGGTCACTACGGGAGTTGCTGTGGCTGCGGAGAGCAGTGGGCGGAATGAGTCTATGCTGAAGGTCCTGGGTGGCGGGGTGATGGACTGCTATGCCAAATACTGGATTTACGTGTGTGGGGGCATGTTTATTATGGTCAGCTTTGCTGGAAAATTGGTGGGCTACAAGATCATCTATATGCTCCTCTTCCTGCTCTGCCTCTGCGTCTACCAGATATACTACACACTCTGGAGGCGACTGCTAAAAGCCTTTTGGTGGTTGGTTGTGGCCTACACCATGCTAGTGCTCATCGCTATCTACACCTTCCAATTTGAGGACTTCCCTGTTTACTGGAAAAACTTCACTGGATTCACAGAAAACCaGCTGTCTGACATCGGTCTGGAGACGTTCGAACTGTCAGAGCTCTTCACCAGCATTCTCATCCCTGGCTTCTTCCTGCTGGCCTGCATCTTGCAGCTGCACTACTTCCACAGGCCCTTCATGAGGATCACTGACCTGGAGCACGTGACCCCACTCTGCAGGAAAAAACCTGGCAGCGAATCAAGACTCTTGGAGGGAATAGATGGGGAGGGACTTCCAGAGGGAAATCCCGAAACTGAGTTGGGAGATGACCAGTCACAGGATGAAGATCTGCCCAGTAAATGGGGCCTGGTTATGGACCGGTTGATGGTTCTGTTCAGGAAGTTTTCAGAGATCCTGAGACAGGTGCAGGTGTTCATATGGAGGACACTGGAGCTGCACATCCTCAAGATTGTGGCTTTTTTCATCATCTGGGTGGCTCTGGGAGAGCCCTCTGTGATGAACCTGGTGCTGGTGGTTCTGTGGTCCTTTGCCATGCCCTTCTCCCGCTTCCGTCACATGGCCTCCTGTCTGTCCACTGTGTGGGCTTGCATCATCATCGTCTGCAAGATGCTCTACCAGCTGAGCATTGTCAACCCCATAGAGTACTCCAGCAACTGCACCAGGCCTTATGTCAACAAAACCAGTCTGGAGGAGAATGAGATGCTGAACTCCACCCTTTACAAGGATCAAGTGGATCCGGCTAACTGGTTTGGGTTCAAGAAAGACACCCCTGTCCTAGGATACATCAAGAACCACCTCCTGATACTGATGTTGCTGGTGTTCGAGGCCACAGTGTACCGCCATCAGACTCACCACTACAAGCAACAGCAGATTACTCCTCCGACCATCCAGGCCATCTTTCCACTTGCCACCCGAGAAAACCTGGACCAGGGGCTGCTGAGTTGCCTCAAGTACTTCCTCAACTGCTGCTTCTACAAATTTGGCCTGGAGATCTGTTTCCTGATGACCGTGAATGTGATTGGTCAACGTATGAACTTTCTGGTTATCCTGCATGGCTGTTGGCTGGTGGTGATCCTGACGAGGCGCCGGCGGACCTCCATTGCTCACATCTGGCCCAAATACTGCCTTTTCTTGGTCTTCTTCATGATCTACCAGTACATGCTGTGTGTGGGCATCCCACCAGCACTCTGCATAGATTACCCCTGGCGTTGGAAAGGTGCTGTCACCATCAATTCTGCCCTGATCAAGTGGTTTTATCTGCCGGATTTCTTCACTATCCCCAACTCTAAGAACCTCATCTATGATTTCCTACTGCTCATGTGTGCCTCTCAGCAGTGGAAGGTGTTTGAGGATGAACGGGTGGAAGAGTGGATTGTTTTGGCTGGGGAGAACCGGGATGAGATCAACCCCATGAAGGAAAAGGACATCAACCCTGTCCCCAACTTCATCAACTGCAGGTCTTACTTGGACATGCTGAAGGTAGCTGTTTTCCGCCACATGTTCTGGTTTGTGCTGGCTGTGGTGTTTGTGACAGGTGCCACACGCATCAGCATGTTTGGCCTGGGCTACCTCCTGGCCTGCTTCTACTTCCTGCTGTCTGGCACTGATTTGCTTCTCAAGACTAACAAGACACGGTTGTTGCTGTGGGACTGCCTCATCATGTATAACGTTGCCGTCATCATCTCCAAGAACATGCTCTCTCTCCtggcctgtgtgtttgtggagcaGATGCAGGCTAACTTCTGCTGGGTCATCCAGCTCTTCAGCCTGGTATGCACTGTCAAGGGCTACTACAACCCAAAGGAGCAGAAGAACGATGATTGCGTGCTGCCAGTGGAGGAGGCTGGCATCATCTGGGATAGCATCtgcttcttcttcctcctgctGCAACGGAGAGTGTTCCTCAGCTACTACTTCCTGCACATCACAGCAGACCAGCAGGCCTTGGCACAACAGGCATCCAGGGGCTTTGAGCTGTTTAGAAACAGCATTGTAAAGAGCATGAACTTCCACCGCCAGACTGAGCAGAAGTCCCTTTCTCAGTTGAAGAGACAAATGGAACGTATTCGGAGCAAGCAACAGAAATACAAGGAGGGTAGTCATTCTTCAGATACCAAGGCAGAGCTGCCTCCAGAGCAAGAGTCGGACAGAAAGGCCTCCAAGCAGAAAAAGAAGTGGTGGCGTCCCTGGCTAGACCATGCCACAGTGCTGCATTCAGGGGAGTATTACCTGTTTGAGTCAgacagcgaggaggaggaggaccaGCTGGTAGATGAGAAGCCCCCTAGACAGAGTGCCTTCCAGCTGGCATACCAGGCCTGGGTGACCAATGCCAAGTTAGCTCTGAAGGAGAGACAGCGGCACCAGAGGGAGCTGCGCAAACTGGAGAGAGGCAGCAGCAGACAGGCCAGCTCTCAGACCTCAGGTGAAGGAAATGAGAGCGAAGCAGATGCTGGGGAAAGCACAGAGCAGGAAGGGGTGGGGCCAGGGGAGGAAGAAGAGAGGAGTGACATTGTGCAGAGGATCCTGGACATCCTCAAGTTCCTGTGGGTGCTCTTCCTGGCCATGGTAGATGGGATGACGCAGTGGCTCAATGCCCTGACCAagcagtatgtggacacctctACTGTGCTGTGGATTGAACGTTATCTGATGAATCGCAACATCAGCCAGATGCCACAGGGGGAGGACGATCACAGCTCCCAGAACAGCGAGAGTCCCACAGTGGAGACGCGTCTGGATGAGCTGGACACTGACCACATCCTGAGCAGCAGCGCCACAGGGCAAGCACCACAAAGCCTTGGGGATTTGGAGGAGCTGATGGACACAGAGCAGACCACCCTTCAGAACATAGACTACTGTACCACATCCATGAGCTCAGAGCCCACCCTTGACCTGAAGCCGGAGCCAGACCCCCAGCCAAGTCTGCCCCCTCACAGGACCAGGACAGCCAGCGAGCTTCTCACTGACAGGCAGTTCTTTCTGGAGGAGCTGCAAGACTCTGAGCAGTTTTACTCCTCTCAAAACCGGGCGCTTAAGCTGCTTTTTGCTCTCTATAACCTCCTggctgccaattctgagctggtGTGTTACTTCATCATCGTGCTCAACAACATGGTGACCGCCTCTGTCATTTCGCTAGTCCTGCCCATCCTGATCTTCCTGTGGGCCATGCTGGCTGTTCCGCGGCCAGGGAAGACATTCTGGATGACGGCTATCATCTACACTGAGGTAATGGTGGTGGTGAAGTACTTGTTCCAGTTTGGGTTCTTCCCCTGGAACAGCAACCTAGAGACTACGATCAATGAGGGAAAGCCTTTCTTCCCACCACGCATCCTGGGGCTGGAGAAGACCGACAACTATATCCGTTATGACCTGATCCAGCTCTTCGCACTGTTTTTCCACCGCTCCCTGCTGCGGCGTTATGGTCTGTGGGATGGTGATGGGAATCTgcaggataaaaaaaagaaacccctGGAGACAAGTGGGGAAATTGAAAGAGCCCCTGAGGATCCTGATCCTGGCCACAGTCAATTAGAGGAAGCCAAAGCAGGACAGGATGAGAACATAGAACCAGAGCAGAGCCAAGATCTGTCCCCCAGGCCGGAACCCCCCGTCCCACCAGAGCGAGGGGAGAAGAAGAGGAGCAGTGTGCTGCGCTTCCGCAGGAAGAGACAGCAGGCCAAGGACACCAAAGAACCGAAGGAGAGTTCAAAGTCAAAGAAAAAGTTGAAAGGAAACCGCAAGGAGTTGGCAAGCAAAAGGCTGAGAATGTTTGGCGAGAAGGTGAAGCTGCTTCTCCTCAGGATGACACGCAGTGTTTACAGACCAGTCTATGGCTTCTTCAGTGACATCCTGCACACAGAGTACCGCGCAGCCACGGATGTTTATGCGCTGATGTTCCTGACAGACGTAATTGACTTCATCATCATTGTCTTTGGCTTCTGGGCATTTGGAAAACATTCAGCAGCTGCAGACATTGCCTCCACACTGTCGGAGGACCAAGTCCCTGAGGCCTTCCTGGTGATGCTGCTCATTCAGTTCACCACTATGGTCATTGACCGTGCCCTCTACCTACGCAAGACGGTGCTGGGCAAACTGGTGTTTCAGGTCATACTGGTTTTCGGCATCCATCTCTGGATGTTCTTCATCCTGCCAGCTGTCACAGAGAGGATGTTCAGTCAGAACCCAGTGGCCCAGCTCTGgtactttgtgaaatgtatctacTTCTTCCTCTCTGCCTATCAGATACGCTGTGGCTATCCAACTCGCATTCTGGGGAACTTCCTCACCAAGAAATACAACCATCTCAATCTCTTCCTCTTCCAGGGGTTCCGTTTGGTGCCGTTCCTGGTGGAACTGCGAGCTGTGATGGACTGGGTGTGGACAGACACCACTCTGTCCCTCTCCAACTGGATGTGTGTTGAGGACATCTACGCCAATATCTTCATCATCAAGTGCAGCCGCGAGACTGAGAAGAAATACCCCCAGCCCAAGggacagaagaagaagaagattgtGAAGTATGGGATGGGTGGACTCATCATTGTCTTCCTCATCTGCATCATCTGGTTCCCATTGCTGTTCATCTCATTGGTCAGATCTGTAGTGGGTGTGGTAAACCATCCTGTTGATGTCACAGTGACTGTCAAGTTGGGGGGCTATGAGCCCCTGTTCACCATGAGTGTGCAGCAGCAGTCTATCCAGCCATTCACTGAGGAGAACTACACCAGGCTCACAGAGAAATTCAGCCGTGAACCAGTAGCGATGCAGTTCATTACTCTGTACAACTACGAGGACATCGTCAAAGCCAATATCGAGGGCAGCTCAGGGTCTGTGTGGCGCATCAGTCCCCCAAGCCGACAGGAATTGATCAAAGAGCTGCTGAGCAGTCTGGTTGACATGACATTGCGTTTCACCTGGAACTTTCAGAGGGACCTGGGAAAGGGTGGCACAGTGGAGCACACCTCTGACAAGCACTCCATCTACTTGAAACCCAACGACCCTGTGCGAGCAGGCCTAGCCTCCCTGCTGCAGGGCAACAGCACTAAACCTGTGCGTGTCCAGCACATGTTTCCAAAGTACATCAGGGCACCAAATGGAGCAGAAGCCAAACCTGTCAGTCAGCTGTATCCAGATGATGAGTCTAGCTACTTGGATGTGAACCTGACTCTGAATGGCAGCACAGTGCTGGAGTGGTGGGATATTCACATTGCTGACTGTAACCCCTCTGAGGAGAACTGTGGGGTTCTGCCCATGATCATCTTCAATGACAAGGTCAGCCCTCCCAGTCTGGGCTTCCTGGCCGGATACGGGATCATGGGGCTATATGTGTCAGTGGTGCTGGTTATCGGGAAGTTCGTGCGCGGCTTCTTCAGTGAGATCTCACACTCCATCATGTTTGAGGAGCTGCCTAGTGTGGACCGCATCCTCAAACTGTGCACAGATATCTTCCTGGTTCGGGAAACCggggagctggagctggaggaggagctgtACTCCAAACTCATCTTCCTGTACCGCTCACCTGAAACCATGATCAAGTGGACCCGGGAAAAGGACTAGGCCCGGGACAACCCCCAGGCCAACCAACCTATTGCCCCCACCTCACCAGAGGAGTGTTGCAGGCTGTGACACTCacagtttgttaaaaaaagagcCGTGGCCTGAACTTCCTGCCAAGAACTGTAAAAGCAGTGCAAGTGGCTCCTTCTGCCTTCTGCTGTGCTGCTCACAAATACTGACAGCTGGAGAACAGATAGCTTAAtatcattgttttatataaagaaatcaTTGATGACTGCCACTCAACACTAGTTAGTGAGTGGGGATCACAAGAATTCACACTTCATGGCAATGATAACAAAGAACAGCTTGGTGCTTTCCTTGGTTGAGACCaacttttgtttccttttttctccatttctgaaACATGACCTTTAGGCCCTGAGTGGAATTTACCTCTGACCTAGAGGAACGCAGCTCTGATCTCTATTGACGGGGAGTTATGGCAGTTCAGTAGGGCTGTTGACATAATGGAATAGGAAACAGTGAAATAAGGGCTGGGCAGGGCTGGAGGATGCTCAGTCTGGACATGTCTTTCTTAGGCCTGCTCATAATAACAATGGACAAGTATTGAAAAGATTGATTCTGATCACAGACGACAGAGTAGCATCTTAGCTATTCGCTATTCTAACACTATAATCAAAGACCTTTTTCTATTatcataatataaaaaaatgttcaccctggaaaaaaaaaaaaagcttcaaagcttcaaattaaaatgttgcatgtCGGATATTGAGACTCAAAAGTGAGATTTTTAAGACTTGAATTGTTGTAAAGACCTATGCAAAACATACATGTTGGACTCTCACATAGACTGTCtagaagaaacatgtttttttttctgactctcataccaatatattttttttattggttattTTTAACTCCATTCCTTAGTGCAAAACTAAATGTCACAAGACTTGGTCATGTGAGACTTGGTAACAGTGGGAGAGCAGTAATTGGATGTGAAAGGTATTGAAATGTTGACACATTAGTGGAATGGGCCTTGGATGTTTACATGCTggaatagttttatttaaattgtaataaacaAGAAAGCAATACTTTGAGATAGCACAGTACCACTACATTGGTAccattgttttgtatattttttaccaTGCCGCAACATGGCTCGTCTTTTACCTAGTCAAAtacatatgaatattttttataatcatgTTATGTTCAGATAAATGAGAGTAACTTCAGCAGAAGGACATGGGTAGCTGCGTGAAGTTTCAAATGCAAGGGTATTCCTAATTTCTCAATAACCACATCTCAGATCAGTGAATGActatatagtttattttcagaaataaattaaaaccatgtaCATCTGTATCTCTGGCTTTCAAACTAAGATTTGCTGAATGTGTTAAGTTATAATGAAGTGACCTTgctaataaattacatttgtccTCTTCTACCTGCAATATTTTATTAGAGCATATTTTAACCCTAACCACTACATAGCAgacaatacagaaataaaatagtatttaattaCATGTGTTTAAAAGCCTGATTAAGACaatttaacataataaaaacatgtttattaaattcAAC

Function

GO: NA

KEGG:

id description
K22128 PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79666 lncRNA downstream 27743 22440792 ~ 22446550 (-) True AMCG00020489
TU79624 lncRNA downstream 54550 22415335 ~ 22419743 (-) True G63634
TU79616 lncRNA downstream 83078 22383517 ~ 22391215 (-) True G63629
TU79614 lncRNA downstream 89375 22382364 ~ 22384918 (-) True G63628
TU79510 lncRNA downstream 341556 22131002 ~ 22132737 (-) False AMCG00020471
TU79677 lncRNA upstream 32824 22545768 ~ 22546057 (-) True G63680
TU79678 lncRNA upstream 36471 22549415 ~ 22549727 (-) True G63681
TU79679 lncRNA upstream 37003 22549947 ~ 22550167 (-) True G63682
TU79680 lncRNA upstream 38576 22551520 ~ 22551798 (-) True G63683
TU79681 lncRNA upstream 39056 22552000 ~ 22552303 (-) True G63684
AMCG00020489 mRNA downstream 7526 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020488 mRNA downstream 119767 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 149328 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 166818 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020477 mRNA downstream 250594 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020493 mRNA upstream 39904 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 70714 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 88996 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020498 mRNA upstream 264793 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020502 mRNA upstream 277509 22790453 ~ 22824939 (-) True AMCG00020502
TU79413 other downstream 1161688 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4434333 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4458433 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4477276 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4848104 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 30898 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 641748 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2163803 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2598166 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2608154 25121098 ~ 25139385 (-) False G64247

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045200 True 3277 mRNA 0.54 15 NC_007135.7 926258 ~ 945921 (+)
grasscarp (Ctenopharyngodon idella) CI01000043_07301810_07355783.mRNA True 6480 mRNA 0.51 43 CI01000043 7301810 ~ 7355783 (+)