RNA id: AMCG00020500


Basic Information

Item Value
RNA id AMCG00020500
length 3278
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00020500
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22909385 ~ 22916833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCGCCACGGACACGCCCGGGCATCGCGCGTCACACGTCACGCAGCGTGGTTTGCGGAAGGGAAGGAAATAAACACCATCAACACAATTGTGCTGCATTTACCGTCAGCAACGAATCCGAGAGGAAGCTGTCCATCATGCTTGGTGGTGGATTCAAAGCAGAGAGACTTCGTGTCAATCTCCGGCTGGTCATCAACCGCCTCAAACTGCtagagaagaagaaaaCTGAGTTAGCTCAGAAGGCCCGTAAGGAGATCGCAGACTACCTGTCGTCAGGGAAGGATGAGCGTGCGCGGATCCGTGTCGAGCACATCATTAGAGAGGACTACCTGGTGGAGGCCATGGAGATCCTGGAGCTGTACTGTGACCTGCTGCTGACTCGCTTCGGCCTTATCCAGTCTATGAAGGAGCTGGATCCAGGTCTGCAGGAGGCAGTGTCCACCCTCATCTGGGCCGCCCCCCGCCTGCAGTCAGAAGTATCTGAGCTCAAGACTGTGTCGGATCAGCTGTGCGCCAAATACAGCAAGGAATACGGCAAGCTGTGCAGGACAAACCAGATCGGTACCGTCAATGACAGGTATACGGCTGTATCTTGGGTATTGACTTATGGGCTGGGCATTGATGCATTCATGTATATCCCTTTGGTGTATCTCCTGCAGCTGATGCACAAATTGAGCGTGGAGGCTCCCCCCAAGATCCTGGTGGAGCGCTACCTCATCGAGATCGCCAAGAACTACAATGTGCCGTATGAGCCAGATGCCATTGTCAGGCCGGAGGTGCACCCCGGAGAGGAAGCTGACCTCCTCCACATGGACAATGACAGCAAGAAGCCTGGGGGTGGAGGCGGAGGTGGTGGAGGGTTCACTGCTCCACCTGGGATAATGACTATGCCCATGCCTATGCCCATGCCCACCCCTCATGCTCCCTTTAACTACCCTACATCCAAAGGACCAGAGACCTTCAATGGCCCAGTTGGCACCTATGATGGGTTTAACAACTTTCAGCCTCCAGTGACAGGAGGGCAGCCCCCCCAGTTGCCCAGCTGCCCCCCTACATATGAATCTATTGATGAACTTACCAGAAATTCTGATGGCCCTTCACAGGTTTCCGgCCCCTCCGCTCAGATATATGACAACTCAGGCCTCCCAGAACTCCCCTCTGTTCCCGACACTCTTCCTGCATCCTCGTTTGGAGGAAACCCCGGCCCCTCCGATGACATCGACTTTGACGACCTGTCACGCCGCTTCGAGGAGCTCAAGAAGAAAACCTAAACCGATAGCACTCCCTGCCTGCGCTCTTTCACTACAGTTAACAGGAAGGGCTAAAGCCCTGGTTAGAATTCTATACCAACTCTTGTCTTGCAGCACAAATTTGATACCTATACTGTCTATTAGTTACAGATGCCAATTTTACTTTTatcttatttaaatgcaaattgaaatCCACCTGAATGGCTGGGCGGTTTACAACAATAATCCAAGATAAGACTGTTCTCTGATCGGATGACTCCACTGGTCGTGCgcacaagacaaacaaaagtgGACAAAAATAACATGTCTGGTAATCGCCAGTGTCAAAACCTTTCAAAAATCTGAGCTCCTCTCATGGAAAAACGTTTTTTATAATAAGACTTTTTGATAGTGTCTGCTGTAGTACTTATACCATACCAAGTTATACCATCGGTTGTATTTGTGAAGAGATCATTGCAAGTGTTGTAACCCTTAACCCTTGTTTATAAGCAGTTttcatgtgctgtgtgtgtcacaggGAGATGATGGGAGGGCACACTTGGGGATAAAAAGCAGAGCTCTACTGTGTCTAGTGAGTTAGGCTTTCCAAACCTGAAACCAACCAACACTCCTCCACTGTTCAAAGATGTAAGGGAGCGAATAGTGTCAGTCTGCCTCTGCAACTAAAGATTTTGGATGTGCTTGGCTCCGCAGGCCTGTTGCTAACAGGAAATGCTGTCCCTTttaattgctgttgtttttgctcaAATGCAAAATGCAGTGATGAAAGtactaaaactaataataaacttCCAGAGAGGCCCTCATGTCATGTCAGCTGCTATGGTTCCCAGTTGCTTTTCTTGCATGAGATTGAAAACTAGAAATATCCAAATGGTGCAGACAACACATCTGTAACTTAGTTGGAGTGGGTATGTATGCAATTTTGGGTGTCGAATGATTAAGAATAGAAATAGGCATGTATAGGTATTTAGCTGAAGATTGTCGTTTTTATCTGTACTAAAAAACGAAGTCACCAACTAAAGTGGAGAAGCAATTTCCATGTAACAGTAGAGGTtttccttatgttcttaagctttcattttctcttgtagtatacatatatatgctcaatggttttttttgtcattatttccTCAttgcctttaaaataataagaaattcCCAACATAAGAAGAACACTAAAGCAGATTTATTATATTCAAAGCTGAATTTCCCATCCCTGTGGAAATGTTACACTCGTGGCTAGGTTTGCCTGAAATGCAGCAGTACATCATAATGGAGCTAATGCTATTATTGGGGGATTGTTTGCTTACGTTTAACATCTTTAAGACGTCAAACCAATGAATGCTGTATTGCATGGAGTGCAATGGATGTGAATGTTTAAAAGAAGCTATCATTTTAgtgtatgtgaaatatttgattTACACTGAGTTTGCCTTAGTTATCTTCTTTTGTCAGTGGCCTTTGTTCTGCAGTGTGAGTTTATTAAGCAAACTCAGAAGAGGTAGTGACTTCTGTGCTGTCTGGATGTTTTTGGTTTACtgttgcacatttttattttttgccataGCTTCAGAGTCAGAATGTTCAATGCTACAAATTCAGAAGGATTGTCTATTTATGTGaagatttttttcctttcctgatTTGTAGTGTATTGAAAAGAATAGAGACACCAGGATATGAACTGGACTGTAACATCAGTAAATGTTTCAAGTcacagattttatatataaccaTGGTGGTAAAGTAAATTTAGACCCCATGTCCCCTCAAGACTTGGCCCAGTTTGCATCATGTGCTTTAAATGCTGTCTTCTGCTTGTCCTACTGTTCTTAAGAATGCACTCCTATAACCATTCTTTattctgatttttatttgaagtgATGTAGAGTTTATAAAGTTTGTTGCTAATAATTATACCCTttagtgaaaaaatattttaattacttataaCTGACATCTTCAAaggatatttttctttcctgtcaTCCAAAATggtataataaagaaaatatttccaaa

Function

GO:

id name namespace
GO:0007032 endosome organization biological_process
GO:0048675 axon extension biological_process

KEGG:

id description
K19476 IST1; vacuolar protein sorting-associated protein IST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79568 lncRNA upstream 518144 22383517 ~ 22391241 (+) True G63592
TU79532 lncRNA upstream 526894 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA upstream 554406 22354018 ~ 22354979 (+) True G63589
TU79529 lncRNA upstream 701354 22207708 ~ 22208031 (+) True G63562
TU79426 lncRNA upstream 1269729 21638996 ~ 21639656 (+) True G63477
TU79791 lncRNA downstream 57045 22973878 ~ 22974091 (+) True G63772
TU79803 lncRNA downstream 136965 23053798 ~ 23058400 (+) False AMCG00020505
TU79804 lncRNA downstream 151478 23068311 ~ 23070149 (+) True G63784
TU79809 lncRNA downstream 160068 23076901 ~ 23077313 (+) True G63787
TU79811 lncRNA downstream 169545 23086378 ~ 23086933 (+) True G63789
AMCG00020499 mRNA upstream 656 22901112 ~ 22908729 (+) True AMCG00020499
AMCG00020497 mRNA upstream 132900 22759678 ~ 22776485 (+) True AMCG00020497
AMCG00020496 mRNA upstream 182149 22713509 ~ 22727236 (+) True AMCG00020496
AMCG00020491 mRNA upstream 326926 22580097 ~ 22582459 (+) True AMCG00020491
AMCG00020490 mRNA upstream 355171 22543800 ~ 22554214 (+) True AMCG00020490
AMCG00020507 mRNA downstream 36609 22953442 ~ 22961731 (+) True AMCG00020507
AMCG00020506 mRNA downstream 77463 22994296 ~ 23001846 (+) True AMCG00020506
AMCG00020508 mRNA downstream 128346 23045179 ~ 23052687 (+) True AMCG00020508
AMCG00020505 mRNA downstream 141455 23058288 ~ 23062149 (+) True AMCG00020505
AMCG00020514 mRNA downstream 174421 23091254 ~ 23113539 (+) True AMCG00020514
TU79558 other upstream 536625 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 767228 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 3273164 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 3308648 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 4575353 18332569 ~ 18334032 (+) True G63045
TU79808 other downstream 153578 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1135156 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1135156 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 1562002 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 2157224 25074057 ~ 25076690 (+) True AMCG00020572

Expression Profile