RNA id: AMCG00020510


Basic Information

Item Value
RNA id AMCG00020510
length 2373
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00020510
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23033583 ~ 23037814 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cAAAGCAGAAGATACAGACTCAGCCATGGCCAGACTGGATGTCACCGAGCACTGCCACAACATCGCCTTCCCGGGACACTTGCACACTCAGGAGTCCCTCGGCTTTGCTCAGAACTTCCGCTTCCAGGACAGCGACACTGTCATTGTCACCTACCCCAAATCAGGTACAACGTGGATGCAGGAGATCTTGACCCTGATACACAGTAAAGGTGACCCAACCCTGTCTCAGAACATTCCCAACTGGTCCCGGGCTCCCTGGCTGGAGCAGTTCTATAGCCCCGAGGTCCTGGGAGCCTCCCAGAGTCCCCGCATCATCACCACTCATCTGCCCTATCACATGTTGGCCTCTGCACTCAAGGGCTCAAAAGCTAAGATTATCTACGTAGCCCGAAATCCAAAAGATGTTGTTGTGTCCTTTTATTACTTCCATAAAATGGCCAACTTCCTCCCTGACCCCAGCTCCTTTGAAGAATTCCTGGACAATTTCTTGGAAGGAACAGTGCATTATGGATCCTGGTTTGATCATGTGAAGGGCTGGACCAGTCACAGCAATGACCTGAACTTTTTGTACATCGCCTATGAGGAGATGTGGAAGGACCTTAAAGGCTCTCTGGAAAGGCTGTCCAGTTTCCTGCAATTTCCCTTGCAGCCAGATGAGCTGACCAACACCCAGAGACACTGCAGCTTCAACAgcatgaaggaaaacaaaatggtgaaCTACACGCTCATCCCTGAGGAGATCATGGACCACAGGAAGGGCCAGTTCATGAGGAAAGGTAAAATCGGAGACTGGAAGAACATTTTCACGAAGCAACAGAACAGTCGCTTTGAGGACTTCTTCGATGAGGAGATGTTGAACACAGACCTGACCTTCATATGGGAGTGACCTGAGGAATGCCTGCTGTTTGACAATCAAAGAATATatataattgtttataaaGCTGTTCAtgagaatgttttatttgatatagggacaaatactgtgaaattcttatttttaaaataattactgtgtTACTGTTATCTCTACAATGGCACTTTTTGGGGAAGAGAAAAAGTGTTAAGGGTACAAGATTTTATCAAACATAagaattattttgtatagagATAagcttctgttattttttatctaACCTTTAAACAGATATATTTAGAAAGTGATACTTTGTGGTAGTTTATTTCCTTCCCTGtaatttcctttgtttctcTGTCTTCATCTGCAGACACATAGGCAGACTGACTTTTAGGTCAAAAGTACAAGAGAGTACGTGGTTAAATGCGTGGTTCAGATATGTAGAACAGTGCACAGTGCACCCTAATATATGTCATAGGGAACTCGGTTGATGATGTATTATCATTGCAAAATACCCTGTTGACATCTGTCACCCACTCACACCTACAGAATATATATGCAAGTTTGGCCTCTCAATTTGTGATCTGCTTTGTATGGCATCTCATACCCTTTAAGTGTTTGTCATAGTGGGGGAGGGGTAAGTCCTCTAGCCAGCAAAAGTTAAAAAGTACAACATGACAGCTGTGGCTCTAGACAGGCCAGTCAAGTGAAATTGCTTTGTATCGATAACATTTCTTCACTGGGGAGTGTTTGTCAAAAGGTTTATGTGGAAATCACTAAGAGTAGGAAGTTCATGACCAGAATAGAAACACATGAAGGAGAACCCAGAATTTACAAGATTGGATTTTATGGTGACGCTTCTGTGttaaaatgctatttttttatttcacaactgtatagaaaaaagaagaagctgAAGACAACCTTCTGAGGTTAAAGAAATGTAAGCCAGAAAGAACTACAAGATCAGTATACGATCAATAAGTGACTGTGGTAGTctgataagaaaaaaataaacaatatatttgaagaATTAGTGATTAGTGCATGCTGACTATGTACAGATGAGGAATCTAGACTTGAAAATACACAGGTAGCTTTGGGGAGATAATACACCAGGCAGAAGGAGGAACTAGTTAGACGGACGATTGAACACTACACTATGATTAGGTTCCTTGTCTgctatatataggtatatatgaACTCTATTAATCTGAACATGGGTGCTGCTGTCGTTGTTTCAGTTGCGAAATGCAAGTCGACAGACATGTGACATGTGACTTATTGTAGAGAGGAAATACAATGCTTTGTGTTGTGCACTGTGCATAAGAGTGTCATAACTGATTTTCCAATTTtctattcaaatgtttaaaaatgtctgtcaCCTACAAAAACTAGATTTTGCTCagtaatgcataatttaatcAGTCAGGGGTTTAAGTGGGAGAAACAAGGAATCCAGCCCATGTTGTTTGTTTAGATTCACAGCAAATAAAACAGTGGGCATAATACTTTCAACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050294 steroid sulfotransferase activity molecular_function

KEGG:

id description
K01015 SULT2B; alcohol sulfotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79682 lncRNA downstream 481000 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 481280 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 481785 22551520 ~ 22551798 (-) True G63683
TU79679 lncRNA downstream 483416 22549947 ~ 22550167 (-) True G63682
TU79678 lncRNA downstream 483856 22549415 ~ 22549727 (-) True G63681
TU79826 lncRNA upstream 24244 23062058 ~ 23068200 (-) True G63799
TU79818 lncRNA upstream 30505 23068319 ~ 23070302 (-) True G63791
TU79827 lncRNA upstream 32587 23070401 ~ 23070820 (-) True G63800
TU79863 lncRNA upstream 133994 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 156330 23194144 ~ 23194529 (-) True G63834
AMCG00020501 mRNA downstream 54959 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 88969 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020504 mRNA downstream 102591 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020502 mRNA downstream 208644 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020498 mRNA downstream 244499 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020509 mRNA upstream 33036 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020511 mRNA upstream 126623 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020516 mRNA upstream 228193 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020521 mRNA upstream 834600 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 881897 23919711 ~ 23923789 (-) True AMCG00020523
TU79676 other downstream 488894 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1720978 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4993623 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5017723 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 5036566 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 116878 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 1638933 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2073296 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2083284 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2171245 25209059 ~ 25211063 (-) True G64260

Expression Profile