RNA id: AMCG00020517


Basic Information

Item Value
RNA id AMCG00020517
length 7969
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00020517
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23657711 ~ 23682302 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGCTGATGAGGTTCTGCCGctagcTTGCTTTGTTACACGAGAAGCTCCAGAGCAGATACTTGCAGTATCCAGCCAGGTGGAGAAGGACCAGACAGATTCCTCGCTCCCCTCCAAACGACCTTCATCAGGGTCCGGGGTGCAAGACGCTCCCCTTTCCTCCAAACGTCCCAGGACAGCTGACAAGGGCGCTGTTGAACAGATGTACCAGTGCCCGTACTGTAAGTACAGCAACACTGACGTGAACCGCATTAGGATGCACGTGATGACTCAGCACTCTGTCCAGCCCATGTTCCGCTGCCCGCTGTGCCAGGACATGCTCAACAACAAGATCCACCTGCAGTTCCACCTCACACACCTCCACAGCGTGGCCCCAGACTGCGTGGAAAAGCTCATCGCCACGGTGACTGCAACGGAGGTGTTACCGACAAGCATGTTCATACCAGTGCCtggcccagagagagaggggcagaacACACCACAGACAACAGCCAACTGCAGCACTGATGACTCAAAGAAGCCATCAGAAACCTCAGAGGCTGAGCCTGAGAAGGGGGCCCCACTGCCTTCAGAAGCTGCAGAAGCCCGCAAGTCACCTCTAGAAGACCAGGCCTCAGCGAAGGAAGAATCTGCTGGGTTCCTCTGCTGGAAGAAAGGCTGCAACCAGGTTTTCAAAAACTCCAATGCACTCCAGATGCACTTCAATGAGGTCCACAACAAGAGGCCACAACTGCCTGTCTCTGACAGACACGTCTATAAGTACCGCTGCAACCAGTGCAGCTTGGCCTTCAAGACTGTGGAGAAGCTCCAGTTGCACTCACAGTACCATGTCATCAGGGCAGCCACCATGTGCTGCCTCTGTCAGCGTAGCTTCAGAACCCTACAGGCCTTAAAGAAACATCTAGAGACCAGCCACCTCGAGCTGAGTGAGGCCGACATACAGCAGCTTTATGGGGGCTTGCTGATGAATGGAGACCTGATGGTAATGGGTGACCCCTCATTGGGAGAGGACCAAGGAGCTCTTGGTGAGGATGACAAGGAAGGAGATGAGAGTGATCCAGAAGAGAAGCAAAGCCCGGCTGGTAGTGACTCGGGTTCGGTACAAGAAGACTCTGGATCAGAACCTAAGCGGGCACTGCCTTTCCGGAAAGGCCCCAACTTCACCATGGAGAAGTTTCTGGATCCATCCCGACCATTTAAATGCACAGTGTGCAAGGAGTCCTTTACCCAGAAGAACATTCTCCTGGTCCACTACAACTCTGTCTCCCACTTGCATAAGGTCAAGAGGGCCTTACAAGAATCTACCACTGGCCAGCCTGAGCCTACTAGCAGCCCAGACAACAAGCCTTTCAAGTGCAGCACCTGCAATGTAGCCTATAGCCAGAGTTCGACCCTGGAGATCCACATGCGCTCTGTCCTCCATCAAACCAAAGCTCGTGCAGCCAAACTGGAAGCAGCAGGGGGCAGCAGCAGTACCATCAGTGCAAGTGTAGTGTCTGTTGGTGGAGGTTGTGTGGTGTCTTCAGCAGGCACCTCTACACCAAGTCCTAATCCATCTATCAATACCACAAGCACCACTAACAACAATTCCTCAGCAGGACCTCAGACTGTACAGAGCTTGCTGGGAAGTCAGCTGCCACAATCTCATACCATAGATAGCCTTGGGAATTCTTTGGCAACTGGCCTCCCTTCACCATCTGAACATAAGGAatcaaagaagaagaaattagCAGACATGCTGTCCTCTAGGGGACAACAACAGcagctacagcagcagcagcagcagcagcaacaacagcagcaacagcagcagcagcagcagcagcagcaacaacagcaacagctgGCCCAGGCTCAGGCTCAGGCTCAAGCCCAGCTCCAGCAAGAGCTCCAACAACAAGCTGCCCTTATCCAGTCCCAACTTTTCAATCCAGCACTCCTTCAGCACTTCCCAATGACTACCGAAGCTCTTCTCccactgcagcagcagcagttgcTCTTCCCTTTCTACATCCCTGGAGCAGAGTTCCAGCTCAACCCAGAGATCAATCTGGCTAGCAATGGCTCCTTGGACAACATGAAATCTAGAGATAGGAAAGACCACCAAGCCACCACAGCTGCTGGAAACAATGAGCTAGGCTTTCCACCCCCCAGAATTGCCTCAGATGCTCGTGGGAATGCTACCAAGGCCCTCCTGGAGAACTTTGGCTTCGAACTGGTTATCCAGTACAATGAGAACAAGCAGAAAGTCCTGAAGAAGCCAGGAGGCATTGGAGTTGTTGGGCTCAGCGGACAAAGCAGTATCAGCCGAGTAGTGGACCCAACTGAAGGACTCGAGAAATTGGAGTGTGAGGCTTGTGGGAAGCTCTTTTCCAACATCTTAATTCTGAAGAGTCATCAGGAACACGTCCATCaagctttttttcccttccgCTCCTTAGAGAGATTTGCCAAGGAATACAGGGAGCACTATGACAAGCTGTACCCTCTTAGACCCCAAACACCTGAGGctcctcccccacctcctcctccaccccctcctcctccacccccacctCAACCAGCTCCGACACCAAATATTCCTGCTTCTGCACCTCCTCTCACACCACCTGCTATTTCTACACCACAGCCTCCAGTTCCCATGGCTCAGCTTTCCATGCCCATGGAGCTCCCAATCTTCTCTCCACTCATGATGCAGCCTATGTCTCTCCAGTCCTTGCCCTCACAAATCCCTACCCAGATGCAATCTGTGGAGCCCCTGGCCTCTGACTTGGCTCAGCTATACCAGCAGCAGCTTACCCCAGCCATGCTtcagcaacagcagcagaatAAGAGGCCACGGACTCGCATTACAGATGACCAGCTGAGGGTCCTGAGGCAGTACTTTGATATCAACAACTCCCCAAATGAGGATCAGATTAAAGAGATGGCTGATAAATCTGGCCTACCCCAAAAGGTCATCAAGCACTGGTTCCGCAACACCCTATTCAAAGAGCGTCAACGCAACAAGGATTCACCCTACAACTTCAACAATCCACCTGTCACTACGCTGGAGGAAACCAAAGTTGATTCCAAACCTCCTTCACCTGAGCCTATGAGACCAGAGTATTATGGTAGCAAGAGGTCGTCAAGAACAAGGTTTACTGACTACCAGTTGAGGGTGCTGCAGGATTTCTTTGATGCTAATGCCTACCCTAAGGATGATGAATTTGAGCAGCTCTCCAACCTGCTGAATCTGCCCACTCGTGTCATTGTAGTGTGGTTTCAGAATGCCCGTCAAAAAGCTCGTAAGAACTATGAGAACCAGGGAGAAGGGGTCAAGGAAGGAGAGAGACGTGAGCTGTCCAATGACCGTTATATCCGTACAAGTAATCTGAACTACCAGTGCAAGAAATGCAGCCTGGTCTTCCAACGCATCTTTGATCTCATCAAGCACCAGAAGAAATTGTGTTACAAGGATGAAGATGAAGAGGGGCAATATGACAGCCAGAATGAGGACTCCATGGATGCCATGCATGAGTACCACACCCCATCTGGTTTATCCTGCAACACCCCTGTACCCTCCTCCTCCAGTCTCTGCCCTCTGCCTCCTTCCTCCTCAGCTTTCACTCACATGACTTCTTCTGACAAGGAAGAGGCCACACCTGCTACCAGACAGAACTCTTATGATGAGAAGACAAAACACTCAGCTGAACCATCATCACAAATCCCACCACAGGAGAACCAGGGGCCTTCCAAACAGGAGAGCCCCCCGCAATCACAACCcgagcagcaacagcagcagtcgCCACAGGAGGAGAAGGTCCAGGTGACCACAAAGACTCCACAGCATTCCTCTCACTCCCCATCCCAGCAGCAGCAACTTCAGTCTGGTCCTGCTGTTTCCCAGGCCAGCCCTACTCATTCACAGAGTTCCCACATGACACTTAATCCCATCCTGACCTCTACTCCACAGCAGCAACAGCCCCAGTCTCAGCCACagtcacagcagcagcaacttGGAAACATGGCCCAGCAGATGATCCCATATCAGTGTGACCAGTGCAAGCTAGCCTTCCCTTCATTTGAGCACTGGCAGGAGCACCAGCAACTGCATTTCCTCACAGTGCAAAATCAGTTTATCCACCCCCAGTTCCTGGACCGCCCCATGGACATGCCCTTCATGCTGTTCGATCCCAGCAATCCCCTCCTTGCCAGTCAGCTTCTTTCAGGAGCCCTACCCCAGATCCCTACCAGCTCTGCCACTTCACCTTCCACCCCCACTTCCACCATGAACTCTTTAAAGAGGAAGCTAGAGGAAAAAGCAGGTGCCAGTCCAGGGGAGAATGACAGTGGCAACAGCGGTGAGGAGCCACAAAGAGACAAGCGTCTTCGAACTACCATCACACCTGAACAGCTTGAGATCCTGTACCAGAAATACCTGCTGGACTCCAACCCTACCCGTAAGATGCTTGACCACATTGCTCATGAGGTAGGCCTGAAAAAGAGGGTGGTGCAGGTGTGGTTTCAGAACACCCGGGCAAGGGAGAGGAAAGGCCAGTTCCGGGCTGTGGGACCTGCTCAAGCTCACCGTCGCTGCCCTTTCTGTCGTGCCCTCTTCAAAGCAAAGACAGCTCTGGAGGCCCACATCCGATCACGCCACTGGCATGAAGCAAAGCGTGCAGGCTACAACCTCTCTCTAAGCAGTATGCTCCCAGACCATGAAGGTATGCAGCTGAAAATGGATACTCTGGATGGTTCCAGCTTTTCACATCTTCCTCCATCAAACAGTGACGGGCATTGTTCATCTCTGTCCCCAGTGAGCAAAAGCATGGATCTGTCCCCAAGGGCCCTGCTGAGCCCATCATCTATCAAAGTAGAAGGTATGGAAGATTTTGAAAGCCCAAGCATGTCCTCTGTCAACCTGAGTTTTGACCACAACAAGCTGGACAATGACGACTGTTCCTCAGTAAACACAGCCATCACCGATACCACCACTGGTGATGAGGCCAATGCTGACAATGACAGTGCAGATGCAAAGCAATCTCACAACACTGCCGACCTCCTGCCAAAATCTGCAGGGACGGCCCCTTCTCTAGAGAATGAAGATCAGATGTCTTCAGGGCTGGTGAGCCCTGCAACAAGCTACTATGCCAAGGACTATGAAAATGAGACCATGGTGGACTACAGTGAGACCTCCAGTCTGGCAGACCCATGCTCACCAAGCCCTGGAGCTTCGGGGAGCAAGAGTATTGACAGTGGTGACAGGCCGGGCCAAAAGCGCTTCCGTACCCAGATGACTAACCTCCAGCTAAAGGTGCTCAAGTCTTGTTTCAATGACTACAGGACACCCACCATGCTGGAATGTGAGGTACTTGGCAATGATATTGGACTTCCAAAGAGGGTGGTACAAGTATGGTTCCAGAATGCCCGAGCCAAGGAGAAGAAGGCCAAATTGAGTATGGCCAAGCACTTCGGCATCAACCAAACATCTTACGAGGGACCTAAAACCGAATGCACTTTGTGCGGCATTAAGTACAGTGCCCGGCTCTCAGTGCGAGATCACATCTTCTCCCAGCAACACATCTCCAAGGTGAAGGACACCATCGGGAGCCAGCTGGACAAGGAGAAGGAGTATTTCGACCCTGCCACTGTCCGCCAGCTAATGGCTCAGCAAGAACTGGACCGCATTAAGAAAGCCAATGAGGTCCTGGGGCTAGCGCAGCAGCAAGCCATGCAGCAGCAAGGGATGTTTGACAGCCCTCCTCTGCAGGCTCTGAACCTCTCCTCCGCCTACCCCACTTTGCAGGGGATTCCCCCCGTCCTGCTGCCAGGCGTGGGCAGTCCTTCCTTACCAGGCTTTGCTTCATCCAATACAGCTTTAACGCCTCCAAAACCTCCAAACCTCCTGAGCATGCCTGGTGCCAGTGTCCCTTCACCCAGCCTCCCAACATCTGGATTACCCAACAAacctccttcctcttcctccctggCCTCACCCAGCCCTGCCCAGTCCAGCACCTCCACCTCCCACTCCACCCCCACTTCTGCAGCCACACAGTCCGGTTCCCGGCCCGAACCCCCAAAGGAGCGCGATGCTGAAAAGggcagggagaaggagaagccCAAGGAGAAGACAGAGCAGCCTCCCACGCCGTCCTCATCAGGGGGCACCCCAGCGCCTACCACTGCCGCTGTCAGCACCAAGAAAGAGAAACCTGACCCTGCTACACCCGCCACTTCTATGCCAACTCCTGGCATGGAGTATGTGGTGGATCCTGCCCAGCTCCAAGCCCTGCAGGCTGCCCTGGCGTCAGACCCTACGGCTCTGCTCACCAGCCAGTTCCTGCCTTACTTCATGCCAGGCTTCTCGCCGTACTACGCCCCCCAGATACCAGGGGCTCTGCAAGGCGGATACCTGCAGCCCATGTATGGCATGGAAGGCCTGTTTCCATACAACCCTGCTCTGTCGCAAGCTCTGATGGGACTGTCCCCGGGATCCCTTCTCCAGCACTACCAGCAATATCAGCAGAGCCTGCAGGAGGcactccagcagcagcagcggcagctccagcagcagcaacagaagcagcagcaacagcagcagcagcagcagcagcagcaacttcAGCAGCTCCAGCAACCCAAAGCGAGCCAAACTCCAGTTCCCCCTTTACCCCCGGGGACCCCAGACCACAAAGAACCTGCCAAAGATCCAGCGAAAGCTGAAGAGCAGAAAGGCACTCCCTCCTGCGAGGCctcttcctccacctcctcctcctcttcccacCAGAATCCCTCCTCCGAGCAGCACGAGATGGAAAGCAAAAGCACGGACCCCCTCTATGACCAATACATCGTCCCCAAGGTGCAGTACCGGCTGGCGTGCCGTAAGTGTCAAGCCGTCTTCAGCAATGAAGAGGCGGCCGTCAGCCACCTGAAATCGATCTGCTTTTTCGGTCAGTCTGTGGCAAACCTGCAAGAGATGTTGCTTCGGGTCCCCAGTGGCGGGAGCGCAGGGGAGGGCAGCTTCTTTGACTGCCTGGCCTGCGAAACCACGCTGGAAGGGGACGAAGCCCTGAGTCAACACCTGGAGTCGGCCTtgcacaaacacagaacaaTCAAGCGATCAGCCAGAAATGCCAAAGAGCACGCTACTAGTTTATTACCTCACTCTTCAGCCTGCTTCCCCGATCCTAACACCGCATCTACCTCGCAGTCTGCCGCTCACTCTAACAacagcccccctcccccgccaACAACAACAGCCACCACGCCGTCCTCTTCTGTGTCTTCATCCTCGTGCTCCTCCACCGCCACCCCCCCACACGCCACAGCCACTGGCAAACCCTGGCcccaggcccctttctccagagcTTTAGCTGGGAAGCCCAATGCCacttcttctacttcttctttTCCTCCAGTATCCTCACCTTCAACGGTTACCTCAAGTTCATTGAGCACCTCAGGGGTTCAGACCTCGATACCAACAGACGTCTTTACCGACGAGTCTGACTCTGACAGCAGTCAGAAGTCTGTGGACAGGCTGGGCCGCCCAGCAGAGGAGCCACAGCAGCCCAGCTGTCTCAAAGacagtagtagttgtagtagtaatcTCGCTAGCGTAGGAACGGACTCCATCAGATTGTAAAAGAGCTTTCAACGAtggacaatatttaaaaaaaacaaaaaataaaaaacaaacaaaaacaacaaaaaaagcagcgatgttaaaaaaaaaatacaaaaaaagtttaaaaaatatacaaaccaatttcagaagaaaaaaatgtgtaaagacTAACTGCAATTCCAAAGCTTGTAaccaaaaattaaatgttagtgGATTGTTTTCCCATATCAACATGCTGGTTTTCgtttctttcaaaacaaatatatatgaaatagaAGATCACTGCAGTTAAGTTTTGGATACTGTTAGTAGTGGAATGCTGTAGAGCAATGAACTGCCTCAAATGATATTC

Function

GO: NA

KEGG:

id description
K09378 ZFHX3, ATBF1; zinc finger homeobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79811 lncRNA upstream 570778 23086378 ~ 23086933 (+) True G63789
TU79809 lncRNA upstream 580398 23076901 ~ 23077313 (+) True G63787
TU79804 lncRNA upstream 587562 23068311 ~ 23070149 (+) True G63784
TU79803 lncRNA upstream 599311 23053798 ~ 23058400 (+) False AMCG00020505
TU79791 lncRNA upstream 683620 22973878 ~ 22974091 (+) True G63772
TU79937 lncRNA downstream 168048 23850350 ~ 23897755 (+) True G63890
TU79949 lncRNA downstream 216205 23898507 ~ 23899754 (+) True G63898
TU79992 lncRNA downstream 350735 24033037 ~ 24065337 (+) True AMCG00020529
TU80010 lncRNA downstream 388414 24070716 ~ 24072160 (+) True G63947
TU80011 lncRNA downstream 392747 24075049 ~ 24076475 (+) True G63948
AMCG00020519 mRNA upstream 46565 23608590 ~ 23611146 (+) True AMCG00020519
AMCG00020518 mRNA upstream 74971 23575106 ~ 23582740 (+) True AMCG00020518
AMCG00020515 mRNA upstream 425403 23214389 ~ 23232308 (+) True AMCG00020515
AMCG00020513 mRNA upstream 452419 23171800 ~ 23205292 (+) True AMCG00020513
AMCG00020512 mRNA upstream 495816 23120124 ~ 23161895 (+) True AMCG00020512
AMCG00020520 mRNA downstream 131210 23813512 ~ 23857803 (+) True AMCG00020520
AMCG00020522 mRNA downstream 242878 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020528 mRNA downstream 374792 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020529 mRNA downstream 380451 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020530 mRNA downstream 477975 24160277 ~ 24163714 (+) True AMCG00020530
TU79808 other upstream 582766 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1284951 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 1515554 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 4021490 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 4056974 19597238 ~ 19600737 (+) False AMCG00020439
TU79994 other downstream 369687 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 369687 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 796533 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 1391755 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 1395840 25078142 ~ 25084754 (+) False AMCG00020573

Expression Profile