RNA id: AMCG00020520


Basic Information

Item Value
RNA id AMCG00020520
length 4737
RNA type mRNA
GC content 0.61
exon number 33
gene id AMCG00020520
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23813512 ~ 23857803 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTCTGGATTTGAGAGGCCTGTATTATTGGTCAGAGATTACTGTTGGAGGCAGAGCAGgttgaTCAAGCAGAATGGATCTAACATTAATATAGTCCCTGTCATTGCACTCATCTCAGAGAGATATAGCCAGCCAGTCAGTGTTTCTGGAgccaatCTGCTGCAGAAGAGCACCGAGCTGCACAGGTTGCAGATGGCCTGGGAGGAGGTGCAGGGACAAGAGAaggagcgggagagagagaccactGCCCTGGGCAGCCAGCTAACCCATGCCAAGGAGGAGCTACATAGCGCCACCCAGAGGTGTGTGCAGCAAGAGAGGGCTGTGCTGGAGCTGCAGGAGGAGAAGCGGAGGCTAGAAGAGCTGTGCGCCGAGCTGCGGGGGGAGGTGGAACATGCGCAGGcccagctggagagagagaacggGGCCCTGCAGAGGGAGATACACCGTAGAGAGGAAGAGACGGAGGGGCTGAAGAGGACACATGAACAACTAAAGGCCAGGATCACAGCTGTGGAGCACAAGGCTGAACTGAGCGCCGGTCGCGCCGCGGAGCTGGAGAGGCAGCTGGAGATGGTGGGCCGAGAGAGGCAGGAGAGCAGCAGCCAGAGGCACTGGGAGTGGAGGGAGCATCACCGCCAGGCTGCCGAGGAATTGGGAGAGCTGCGTGAGGAGCTGACTGAAGCCCAGCGCTCTCAAGATGTGGCCCTCAGGAGCCTCCAGCTGCAGGAGGAGAAGACCAAAAGACTGGAGGCTGAGAACTGCAGTCTCCAGGACAGGCTGAGGGAGCTGCAGGCCAGGCTGTCCCAGCGGGAGGAGAGGCTAGCAGACCTGGGTGTGGAGACATCCACTCTGAGAGTGAGGCTGCAGGCACAGATCACCGAACGCGAAATCCTCTGCCAGCAGCTGCATACCTCCCAAGATGCACTGCAGCAAATCACTGTGGAACTCAGGGCATACAGGAAAGAGGCAGAGGAGCAGATGACCCAGAGAGACAACAAGGTGGCAGAGCTGCAAGCAGAACTGACTCATCTGCAACAGCAGTATTCAACCTGCTACAACCAGCtggtgagggaggaggagagcggGGTGAGGCTGAAGACGGAGCTGTGTGAGGCCGGAGAGCAGCAGGACCGGCTGGCCTCTCAGGTGTCCGAGCTCCGCACAGAGCTGCATAGACTCCACGCTGAGCTGGGGCTGCTCACTGAGAGGCACAAGGCCACACAACAGGAGGTGTTCAGCCGGGATGACACAGTTCTGAGACTCACCACTGACCTGAAGAAGGCCGAGGAGAACCAAAGAGCTCAGCAAGGGGAGCTGGCGGCACGGATGTCTGAGGTGCAGAGCCTGACGGGGCAGGTGAGAGCCCTGCAGAGTGATGTGAACGGTCTGCAGGACAGCCTGAGCCACCAAGAGGCCGCCATGAGAGAGCAGGAGCAGAGAGCAGCCCAGCTACAGCAGGACAGGGAGCGGCTGTTCacagagAGTGCCAGTCAAGAGGGGGCGCTGCAGAAGCTGCACGTGGAGTTGCAGCGTTGCCAGGGGGAACTGAGGGAGCAGGCGGAGCGCTGCCAGGGGGAGGCGGAGGGGCTGCGCAGGGAGCAGGAGGCCTGTCACAGGGAGCTGCAGGAAACACGGGGTCGGATGCAGCACTATCGCGCCACCGTGGAGAGACTCGGCTCGGACCTGGAGCTGGCACAGGGGCTGCAGCGAGAGCTGGGGGAGGAGgtGTGTCAGTATGAGGCGCGTCAGCGTGCTCTGGACTCTGAGGTGGCTCGGCTGCGGTCAGACCTCCAGGAGGCGGAGGCAAGGGTGGTGGCTAGAGAGGGGCGTTGCCAGGCCCTGTCAGACTCTCTGGATGTGTACAAGCAGAAGTACCAGACCTGCCTGGGCAAAGTGACGGAGCTGGAGAGCACACTTCAGTCCAGAGAGGAGGACCTGAAAGAGGCCAAAACACAGGTATCAGAGCGTGAGGACGAGATCGTGAGGCTGCGGGCCAAGGCCGTGGTGCTGCGCACTGACCTGGAGTCGCATCGTGCCCAGCTGGAGACTGGAGACGAGGCCATCAGCGACCTGAGTCAGCAGCTGAGGAGCACCCAGGCAGAGCTGGAGAGAAGCCGCAAACACGGCCAGGAGTGTGAACTGGTCATCGGCTCACTGAGAGACAAGACCACAGCGCTGCATGCACAGGTGGAGGAGCAGGATGAGGGAGCAGTGACGATCCAGGCCGATTTCTCTGCATACAAAGCCACTCACATGCACTCGGACTCGGAGTATGATGCTCAACTCTTACACATCCAGGAGCTCCAACAGGAGCTGTCCTGTGCGGTGCAGCAGTGTGACCAGGGCTCCCAGCAGCTCAGTAACTGCCAGGCTGCGCTGCACCAGCTGACAGATGAGGTGCACCGGCTCACAGAGCAGAGGGCTAACAGCCTGCAAGAGGTGCTGAAGCTGGAGGAGACAGTGAGGCGGCTGCAGGGGGATGTGGCTGCGGAGGTCCAGAGGAGGGAGGCGGAGGTGGACAGGCTAGAGCACTGCGTGTCCAAACTGGAGGAGGACCTGAAGGAGGCCCAGCGACTGTGTGCTCAGAAAGAACAGGCAGACTTGGTGGAGGCCCACGGGACAATCAGGGTGCAGGCAGCTGAGGCTGAGCGGCAGGCAACGCTAGCACGAGGCCTCGAGGCCGACATCCAGAGGCTGAAACGAGAGAGACGacaaagagagagcgagagcaccGCTTTACGGGCTGAGCTGCTGCAGCTCAAAGACGAGCTAAAGGAAGCACATGCCCAACACAGGGACACCGcCCAGGAGCTGGCGCGGCAGGAGGAGAAGGTGGTGCTGGCAGAAGGGGGGCAGCAGCAGGCGCAGGAGCAGCTGGGGGAGCGTGTGGCGGAGGTGGTGCGACAGGAGCAGGCCGAGCGCAGACTACAGGCCGAGCTGCGGAGGCTGAAGGAGCAGCTGGCCAACACTGACCAGGAGATAGTGGAGTACAGGGGCCTGATGGAGCGTCTGAAGGCGGAGCTGAGAGAGAGCCGGCAGGCCCAGCACAGCGCACAGCAGGAGGGGGCCAGGCACCAGCAGGGGGCGCAACGGCTGGACAGGGAGCTGGAGAGCTGCAGAGAGCACGTCAAGACTCTGCAGAAGCAGCTCCAAGAGCAGGTGGAGGCTGGCCGGGCGCTGCGGGCAGAGCTGGCACAGGAGCAGGCGAGGCAACAGGATCAGCAGTGCCGACTGCAGAAGGCCCTGGAGAGGGAGCGGGCcctggagagggagagcgaggaGTTGAAGAGCATGTTGATGTCCACACAGCACCTGttgaaagagagagagggagagctcTCTGGCCTGCAGGAGCGCGTGTCTGAGTTCCAGAGCGCCTCCATCTGCCTGCGAGAGGAGCACACGGCCTGCCAGGCCCAGCTGCAGCTGTGCAGGAGAGAGCTGGAGACGGCCCAGAGCCACAGCCAGAGACAGAGCCAGGAGATGGGCAGGCTAGAGGAGATGGTGTCGAGGCTCAAGTCAGAGCTGGACACGGCTGAGGACAGTGAGAGGCAGGGGAGGCAGCAGGCGGCCTCCGCAGAACAGAGAGTCAGAGAGCTGAGTCTGGAGCTGACAGCTGCCCAGGCCGCACAGAAGGAGAGCATGGAGCAGCTGGGCAGCCGGAGCCGTGAGGTGGCAGCGCTGCGTGGGGAGCTGTCTCGCTCCCAGCAGCATGAGGCCCAGTTGGCCCGGGACAGCGCAGCCCAGGAGGACAGACTGACGCAGTTTGCCGCACAGCTGCAGCAACTGCGCAGCCTCAGCAGACACTCACAGGACGAGGCTCGGACCTACGAGGGCAGACTGTCGGAGCTGAACGCCCAGCTGGCACTGTCGCAGCGCTGGGGTCAAGAGCAGCTGGCAGCGCTGGAATCCAGAGAGGAGGAGACGGTGGTTCTCAAAGTTGATGCCTTACTCTCAGAGCTGGACTTAATGGAGCAGAAGTGCAAGGCGACAGCTAATGAGGTGGAAGTCCTGCGACAGTCCTTGGCAAACGCTCGCTCAGATAGCTCCCGTCTGCACCGAGAGAGCGAGCTGGTCGTGTCCAACGTCAACCACTGGGTGAAGGAGCAGAAGGAAGCCAACGAAAAACTAGGCAACAAGATTAAGGAGCAGAGTAAGCAGATAGTCCATCTAATGGCTGAGAAAGATCACCTACAAGAGACTATGGAGGCCCTGCAGAGAGAAAACAGGAAGCTGAAGGCTGAGGTGGATGAGAGGAGGATTGAGCTGGAGAGGTTCAGGGCCCTACAAGCCACTCAGTCAGACCAGCGGAGTGCCTTGACACACTTACGTAGCCAACTTGACTCAGCCAGTTATATAAAAGCACATGGCGCTTCTGGGACCGCGCGCAGAGTGAGCCGTGCGCTGCTGTGCTGTGgctctgcgtgtgtgtgtgagcgctgCGCTCTTAGTGCGTTCGGGGAGGCCGATCCACTCTGTCCAGTCACGCAGCACTTAAGCCTGTCTTGTTCCCCCCCGTTTCTTCTCTTTCACTGTGTGGTAGAGAAGAGCTGCAGGGTTGGTTGGGAGCACAGGAGCTCAGTGAGAATGAAAGCAGAGATAGGACTGGTCCTTCTCAACATTAGTCGGTTTTCTCATGTCCTCAGGCCTTCCCACGTCCCGAGAGGTGCCATTCATAGCCAAGGAAacctgaagaagaagaagacacTCCTGGCGGCCAACCTGAGCTGA

Function

GO: NA

KEGG:

id description
K23223 PMFBP1; polyamine-modulated factor 1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79811 lncRNA upstream 726579 23086378 ~ 23086933 (+) True G63789
TU79809 lncRNA upstream 736199 23076901 ~ 23077313 (+) True G63787
TU79804 lncRNA upstream 743363 23068311 ~ 23070149 (+) True G63784
TU79803 lncRNA upstream 755112 23053798 ~ 23058400 (+) False AMCG00020505
TU79791 lncRNA upstream 839421 22973878 ~ 22974091 (+) True G63772
TU79949 lncRNA downstream 40704 23898507 ~ 23899754 (+) True G63898
TU79992 lncRNA downstream 175234 24033037 ~ 24065337 (+) True AMCG00020529
TU80010 lncRNA downstream 212913 24070716 ~ 24072160 (+) True G63947
TU80011 lncRNA downstream 217246 24075049 ~ 24076475 (+) True G63948
TU80015 lncRNA downstream 230711 24088514 ~ 24093237 (+) True G63951
AMCG00020517 mRNA upstream 131210 23657711 ~ 23682302 (+) True AMCG00020517
AMCG00020519 mRNA upstream 202366 23608590 ~ 23611146 (+) True AMCG00020519
AMCG00020518 mRNA upstream 230772 23575106 ~ 23582740 (+) True AMCG00020518
AMCG00020515 mRNA upstream 581204 23214389 ~ 23232308 (+) True AMCG00020515
AMCG00020513 mRNA upstream 608220 23171800 ~ 23205292 (+) True AMCG00020513
AMCG00020522 mRNA downstream 67377 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020528 mRNA downstream 199291 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020529 mRNA downstream 204950 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020530 mRNA downstream 302474 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020535 mRNA downstream 344511 24202314 ~ 24210374 (+) True AMCG00020535
TU79808 other upstream 738567 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1440752 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 1671355 22135368 ~ 22142157 (+) True AMCG00020470
TU79182 other upstream 4177291 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 4212775 19597238 ~ 19600737 (+) False AMCG00020439
TU79994 other downstream 194186 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 194186 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 621032 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 1216254 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 1220339 25078142 ~ 25084754 (+) False AMCG00020573

Expression Profile