RNA id: AMCG00020534


Basic Information

Item Value
RNA id AMCG00020534
length 1691
RNA type mRNA
GC content 0.35
exon number 9
gene id AMCG00020534
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24226001 ~ 24232399 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGCCCTAGCTACACAGCCACAGAGCTAAAGCCCGGGCTGTAGCGGGTAAATCAGATTATTAGGTAAAATGGATTGTGACGTAGGGGTTTAAAATCACAAGCAGCAGTCAGTGTTACAGCTCTCGCAGAGGAGCAGTCGCTGTtgacttttttctctttctgttttgcatATGGGCATGATACTTGAAACAGTGTAATCTGTGCGAAACTGCAAAGAGCGAGGTGCGAAAGTATGGCTGCTTTTCTGCAGATTCCTGACAATGAAAAGGGCCACGACTTGGACCTGTTCTGTATCCCTAAACACTATGAAGAGGATTTAGACAAAGTCATGATTCCCCATGGTCTTATCATGGACAGGACAGAGCGCTTGGCCCgaaatataattaaagacaTGGGAGGACATCATATTGTGGCTCTGTGTGTACTGAAAGGTGGTTATAAATTCTTTGCAGACCTGCTAGATTACATCAAGGCACTTAACCGAAACAGCGACAAATCTGTCCCCCTGACTGTGGATTTCATTAGACTTAAAAGCTACTGTAATGATGAGTCTACTCACTGTGTCAAAGTTATTGGAGGGGATGAACTATCTTCATTGAGTGGAAAAAATGTTTTAATAGTTGAGgACATTGTGGAGACAGGCAGAACAATGCAGACACTACTCTCTCTTCTTAGCGGATACAACCCAAAGATGGTCAAAGTAGTAAGCCTTCTTGTAAAACGAACATCCAGAAGCTCAGGATACAGGCCAGACTATATAGGATTTGAAATTCCTGATATATTCCTCGTAGGATATGCTCTTGACTACAATGAATATTTCAGAGATCTTAgtCATATCTGCATactaaatgaaaatggaaaacagaagtaCAAAGTCTAAAATAAACTGACCTGATGAAGGAAGGAATGATACTGGGAGGAGTGTGCAGTCTCTGTCAAAGGGCTGATGAGTTCCTAATGGAGAACCACTGTGAATCtgcttgtttaatttattgtgctgTGAAACCTCTTATGTAATGTTCTATTTTTCTACCACAAACCTctggaaaaagtgaaaatgcattGGTATGTACAAGGAGTGAAGACATTTCTGCAATTTTGGTTAATCATGGAAGCAGATATTTAGATAAATTCGtggttaatttttttatatagatgtatagaATATGTACTTACTATTTGATCTCAAAGTTTGTGTATTacgtatatatttattatttgatatatttgttttctttatgaaaagggataaaatatattttacaaaacccGATAAAAGAAATTCCTATGTTTTATgattcctttcatttcattacttgagaaaatgattgttttaaagtCTAAGTGgtaagtatgtatatattatctTGAATTGTACAAGAAAACCGTGCATTCTGGCCTTCGCTAATTTGACAATTTtataattgaactgaattattattattatatcctCTTTGAACAGTAtggatataaaaaaatgtacagtgtaaAATTCTcagttaaatatacaatatcaCAGTCTTAAGACcagcattgttttcctgttatattttatactaagacaaaaatactgcattttgatcataatcattttaattttggcatgtATACTTTTATTTGTCACTATATCTACCACTGGCTTTTTTTCTTATggataagataaaaaaaatgtaacgaatgaaagaaatac

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005737 cytoplasm cellular_component
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function

KEGG:

id description
K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80015 lncRNA upstream 132764 24088514 ~ 24093237 (+) True G63951
TU80011 lncRNA upstream 149526 24075049 ~ 24076475 (+) True G63948
TU80010 lncRNA upstream 153841 24070716 ~ 24072160 (+) True G63947
TU79992 lncRNA upstream 160664 24033037 ~ 24065337 (+) True AMCG00020529
TU79949 lncRNA upstream 326247 23898507 ~ 23899754 (+) True G63898
TU80086 lncRNA downstream 340 24232739 ~ 24242677 (+) True G64009
TU80136 lncRNA downstream 256505 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA downstream 288437 24520836 ~ 24525575 (+) True G64048
TU80134 lncRNA downstream 288437 24520836 ~ 24565492 (+) False G64048
TU80159 lncRNA downstream 361731 24594130 ~ 24597787 (+) True G64069
AMCG00020536 mRNA upstream 932 24216071 ~ 24225069 (+) True AMCG00020536
AMCG00020535 mRNA upstream 15627 24202314 ~ 24210374 (+) True AMCG00020535
AMCG00020530 mRNA upstream 62287 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020529 mRNA upstream 157544 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020528 mRNA upstream 163326 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020532 mRNA downstream 13142 24245541 ~ 24249251 (+) True AMCG00020532
AMCG00020533 mRNA downstream 18676 24251075 ~ 24271033 (+) True AMCG00020533
AMCG00020531 mRNA downstream 72235 24304634 ~ 24308160 (+) True AMCG00020531
AMCG00020537 mRNA downstream 98487 24330886 ~ 24343935 (+) True AMCG00020537
AMCG00020543 mRNA downstream 214877 24447276 ~ 24453600 (+) True AMCG00020543
TU79996 other upstream 170409 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 172124 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1151056 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1853241 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 2083844 22135368 ~ 22142157 (+) True AMCG00020470
TU80130 other downstream 246436 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 841658 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 845743 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1318512 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3183597 27415996 ~ 27418520 (+) True G64730

Expression Profile