RNA id: AMCG00020535


Basic Information

Item Value
RNA id AMCG00020535
length 2725
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00020535
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24202314 ~ 24210374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCCCATATTCGGCCACAATGCAGCGGACACACCGCAGCCCATCAGAGCCGAAGTTACAGGCACTCTCCCAGACTGGCTGCAGGGCACGCTGGTGCGCAATGGGCCCGGCATGTTCTCTGTGGGAGAGACCTCCTACAACCACTGGTTTGACGGAATGGCACTGCTGCACAGCTTCACCATTAAAGACGGTGAAGTTTATTACCGGAGTAAATATCTCAGCAGTGATACATACAAGAACAACATCAAAGCTAACAGAATAGTGGTGTCTGAATTTGGAACAATGGCATACCCAGACCCCTGCAAAAGCATCTTTGCAAAGGTGTTCTCCTATTTTTCCAACATAATCCCAGACTTCACTGATAACTGCCTCATTAATATTGTCAAATATGGAGAGGATTACTACGCTACAACCGAAACTAACTACTTTCACAGAATTGATCCGTACACCCTTGAGACCTTACAGAAGGCGGACTACAAGGAGCACATTGCTGTGAATCTGGCAACTTCACACCCACACTATGACAAAGATGGAAACACTTACAACATGGGCACATCCATCATTGAAAGAGGAATGCCCAAATATGTGGTCTTCAAGGTCCCCCCTAAGACAACAGACGATGCGGATACAGTCTTGAAGAACATGGAGACTGTGTGTTCCGTGCCCTGTCGCTCTGTCCTTTCCCCCAGCTACTTCCACAGCTTCGGGATGACAGACAATTACATCGTCTTTCTTGAGCAACCATTCAAGCTGGATATACCAAGGCTGGCCACTGCTTTCTACAGAGGAGTCAACTGGGCCAGCTGTCTAAAATTCAGTGCTGACGAATCTACTCTAATCCACGTGATCGACAGAAAGACAGGCAAGACCGTGTCCACAAAGTTCTACACAGATGCGTTAGTGGTTTTCCATCACATCAACACATACGAAGAGGCAGACCATATTGTGTTTGATGTTATCGCATACAAGGACAACAGCCTTTACGAGATGTTCTACCTGGAAAACCTCTTGCAGGAGTCAGAAAACTTTGCTGAGAAGAACCAGCTTAAAAGTCCCCCAATCTGCCAGAGATTTGTTCTTCCACTCCATACCAACGAGTCCTTTCTTTCATTACTCTTATCAGGAGTGGAGCTGCCAAGGTATAACTATGAATACAATGGCAAGAAATACCGATATTTCTACGCTGCAAGAGTGGAATGGAAGCCATTTCCAACAAAGATCGGGAAAGTGGATACTGAAACTAAACAGATTTTGGAGTGGGCGGAGGAGAACTGCTGGCCCGCTGAACCAGTTTTTGTCCCATCTCCAAATGCAGTGGAAGAAGATGATGGGATCATTTTGTCCTCAATCATTTCAACAGATCCACAGAAACAACCATTTTTGCTCATCCTGGATGCCAAGACCTTTAAAGAAATTGCTCGTGCCTCCATCAATGCCAGTCTTCATCTGGACCTACATGGTCTCTTTATCCCTCAACATGCTCCTCTTTGACAGAGGCACAGACGGACCTGAAGGAGTTAAACTCGGTCTGCTGCTTTAGCACCATCTCCCTGATACCAGTACTGTGCCTGTAGGTAGCCACCACAGCTGAGGGTCTATGAAAACAGGTGCAAATGGAGGAATATAATGGGAAAATAACACtggcttttatttaaaatatacaacaacaataatggttattttctttcacttgaATTCTGTGTTGTCAGGTTTACACTTGAAGTATGATTTATCTGAGATCCTTTCTGCATAATAATTTTAGGAAAAAAcatgccattttaaaaagttcaTATTATAAAATGATGAGCCATTATAGTCGATCACTAAtggtcaattgcaacgaactggAAGCAGCATCGTAACGGGGGTTAGTATGGAGCTCTGGACCTAACTAGTACACTAGTTGATTACCAGCTCTGTACTATACATGTTCTCCATTGTAACcactgctgccctctagaggatAGTAAAGTACAGGACAAATGTGTCCAATTCCAAGGTGAACATTGAAACGGGTGAAACCCTCTAAACAAACTaccatattaatatttatatgtatgtcaTCACCGTTTTGTTTCCCACAGTGTACCCACAAGTTttactacattaaatataacaCTCACATTCTACCCACTGTGCCCATATTCCTCAATATTATCCCTGCACCCCCATAAGGACCACCAGTGTGTCttctcaaaataaacataacatagAACAAATAGATTACACtgatttgaagaaaatgtaaaagtactAATTTATTTCATGGCCACGCACTTGGTACACTATCATATAAGTAGTCAGTGCACCCTGATATGGAGTAGCCTCTTTTAACATGCATTGAAACTTAATACATTAGATTTTCCTCTCAATTAAAACAACTACAATGGATATACCTCTTTGAAACTATATAGCCTCACCCATagatatacaaatgtatatgtcTATGGCCTCACGTGAGTCTGTGACAATTTACGGGATGGCCTGTCCATGTTTGAATGAATGTGTACAGCGAGTGTTTTTAAATCCTGCTCCCACTTATGTAATGTgatcttgaaaatgtaatgattgtAACATTGTATTAAACCATACAATCTTCATAAATGTTTCTAGACTGTATCTCGACTTAACTTACAGAAACACAGATTgattatattgatatttttagtTACGCCACTGATTCGTGCAGAGAAATTATAGTCTAGTCtctatgttaaaatat

Function

GO: NA

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80015 lncRNA upstream 109077 24088514 ~ 24093237 (+) True G63951
TU80011 lncRNA upstream 125839 24075049 ~ 24076475 (+) True G63948
TU80010 lncRNA upstream 130154 24070716 ~ 24072160 (+) True G63947
TU79992 lncRNA upstream 136977 24033037 ~ 24065337 (+) True AMCG00020529
TU79949 lncRNA upstream 302560 23898507 ~ 23899754 (+) True G63898
TU80086 lncRNA downstream 22365 24232739 ~ 24242677 (+) True G64009
TU80136 lncRNA downstream 278530 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA downstream 310462 24520836 ~ 24525575 (+) True G64048
TU80134 lncRNA downstream 310462 24520836 ~ 24565492 (+) False G64048
TU80159 lncRNA downstream 383756 24594130 ~ 24597787 (+) True G64069
AMCG00020530 mRNA upstream 38600 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020529 mRNA upstream 133857 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020528 mRNA upstream 139639 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020522 mRNA upstream 230740 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020520 mRNA upstream 344511 23813512 ~ 23857803 (+) True AMCG00020520
AMCG00020536 mRNA downstream 5697 24216071 ~ 24225069 (+) True AMCG00020536
AMCG00020534 mRNA downstream 15627 24226001 ~ 24232399 (+) True AMCG00020534
AMCG00020532 mRNA downstream 35167 24245541 ~ 24249251 (+) True AMCG00020532
AMCG00020533 mRNA downstream 40701 24251075 ~ 24271033 (+) True AMCG00020533
AMCG00020531 mRNA downstream 94260 24304634 ~ 24308160 (+) True AMCG00020531
TU79996 other upstream 146722 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 148437 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1127369 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1829554 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 2060157 22135368 ~ 22142157 (+) True AMCG00020470
TU80130 other downstream 268461 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 863683 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 867768 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1340537 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3205622 27415996 ~ 27418520 (+) True G64730

Expression Profile