RNA id: AMCG00020536


Basic Information

Item Value
RNA id AMCG00020536
length 2243
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00020536
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24216071 ~ 24225069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATAACATTTTGTACAGCCCACTATACCAGTCGTCACGCACTGTATAAAGCatagggaggggagagagaagagttGAAGTCTGTCTAGTGGAGATCATAAAGGCTGgaagtgaaaaacacatgaagctagtatttctttgttttttttttaaagaaacatcaaAGTAGTTATACCactccaaaagaaaaatgcagtacGATTACAGcaggaacaaaacagaaaaccccGATCCTATAAAAGCGGAAATTAAAGGCACTCTCCCAGACTGGCTGCAGGGCACGCTGGTGCGCAATGGGCCCGGCATGTTCTCTGTGGGAGAGACCTCCTACAACCACTGGTTTGACGGAATGGCACTGCTGCACAGCTTCACCATTAAAGACGgAGATGTTTTCTTCAGGAGTAGATATCTCCGTGGAGATACCTATAAAAGTAACATGGAGGCCAAAAGAATAGTGGTGTCAGAAATGGGAACTATGGCCTACCCAGATCCATCAAACAGTTTAATCTCTAAAGCAATCAAATTTCTCTCCCATACTGTTCCAGATTTCACAGACAATTGTGGAAACAACATTATTAAATATGGAGATGATTTTTATGCCACTTCAGAAACCAACTACATCAGGAAAATTGACCCGGAAACCCTTGAAACACAAGACAAGGTTGACtatctgaaatacattgctGTAAATCTGGTCACCTCACACCCACACTACGATAAAGATGGAAGTACCTACAACATGGGGACTACTATAGCAGAAAAGGGAAAGACCAGATATACAATCTTCAGGGTACCACCAGCTGAAGAAGACAGTGACAAGAAGAAGCCTGTGCTGAAGAGCTTGGAGGTGATATGCTCTGTGCCGTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTTGGGATCACTGACAATTACATCATTTTCTTGGAGCAGCCTCTCAAACTGGACATCCTCAAGATGGCAACCGCGTACATGAGAGGAGTCAACTGGGCCAGCTGTCTCAACTTCCAGCCAGAAGATAATACACAGATTCACCTGATTGATCGAAAGACCTGTAAGCCAGTGTCAACAAAGTTCTTCACAAATGCACTGGTCGTCTACCACCATGTCAATGCGTATGAAGATGATGGCCACTTAGTGGTTGATGTCATCGCCTATAAGGATAACAGCCTGTATGAGATGTTCTACCTGGCTAGTCTGCAACCGAACTCCAGCAGTGGAGAGGCTAAGGGGAAACTCACATCTAAACCAAACTATGAGAGATTTGTCCTACCACTTCAGTCTGACAAGTTGAAATCTACATCAGCAACTGCTTTGAAGGAGAAAGAGGGCAAATTGTTCTGTTTCCCCGAAACATTGTTTAAAGGAGCCGAGTTGCCAAGGATTAACTATAACTTTAATGGCAAGAAGCACAGATATGTCTATGTAACATGTGTGGAGCAATCTCCAGTGCCTTTGAAGATTATGAAACTGGACATTGAGACTAAGCAGCAGCTGTACTGGGGCGAAGACGATTGCTGGCCATCTGAGCCAGTGTTTATTCCAGCGCCCAATGCAGTGGAAGAGGATGATGGGGTTGTTTTGACTGTGGTGGTCCGCCCCTATCCAGAGAAATCCTCCTTCTTGCTTGTGCTGGATGCCAGATCATTTAAGGAGGTGGCGCGGGCCTGTGTGACTGCAGATCTGCACATTGACATGCATGGCTTCTTCATCCCACGGCGCACATAGCATACAGACTTTCCTTTGTCAATCCTGGGCAGTGTCAGTGTTATAAAGAGCAGGGGGGAAAAGTATGActcaacagaagaaaaactcCTACTCCCTGAATTGCTGCTGACTGGTGATCGTgctaatgtatattttcaagtAAGCTGTTGGGTGGCCTATATGTGTAAACTGTCCATCTTTTCAGTCCACAGCTTAGTATCATTTTGTCTACCTATGCTCTGGAAGAGCAGATTGCCTTAATGTAATATATGGTTTATGTCTGTGGAATAACCCATAAGCCTGATGCAATAAATTCAAGTAAagcatctgtttttttgtcttgcaTTTTGTGCACATAAAAGTACAGCAGTTGCAGCCTGTGTGGGCTGTTTCAGATTAAGAGATCTCTGAACAGGTTTCTGCAAAGCAGGTTTACAGTAAGAGTTCAGATTagtattaataaatgaaaaaaataaaatacacttgaaCTGGGGAATCTAAAGGGCTGCCAAAGAATTTACTAACTGG

Function

GO:

id name namespace
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030902 hindbrain development biological_process
GO:0004497 monooxygenase activity molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0003834 beta-carotene 15,15'-monooxygenase activity molecular_function

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80015 lncRNA upstream 122834 24088514 ~ 24093237 (+) True G63951
TU80011 lncRNA upstream 139596 24075049 ~ 24076475 (+) True G63948
TU80010 lncRNA upstream 143911 24070716 ~ 24072160 (+) True G63947
TU79992 lncRNA upstream 150734 24033037 ~ 24065337 (+) True AMCG00020529
TU79949 lncRNA upstream 316317 23898507 ~ 23899754 (+) True G63898
TU80086 lncRNA downstream 7670 24232739 ~ 24242677 (+) True G64009
TU80136 lncRNA downstream 263835 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA downstream 295767 24520836 ~ 24525575 (+) True G64048
TU80134 lncRNA downstream 295767 24520836 ~ 24565492 (+) False G64048
TU80159 lncRNA downstream 369061 24594130 ~ 24597787 (+) True G64069
AMCG00020535 mRNA upstream 5697 24202314 ~ 24210374 (+) True AMCG00020535
AMCG00020530 mRNA upstream 52357 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020529 mRNA upstream 147614 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020528 mRNA upstream 153396 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020522 mRNA upstream 244497 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020534 mRNA downstream 932 24226001 ~ 24232399 (+) True AMCG00020534
AMCG00020532 mRNA downstream 20472 24245541 ~ 24249251 (+) True AMCG00020532
AMCG00020533 mRNA downstream 26006 24251075 ~ 24271033 (+) True AMCG00020533
AMCG00020531 mRNA downstream 79565 24304634 ~ 24308160 (+) True AMCG00020531
AMCG00020537 mRNA downstream 105817 24330886 ~ 24343935 (+) True AMCG00020537
TU79996 other upstream 160479 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 162194 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1141126 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1843311 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 2073914 22135368 ~ 22142157 (+) True AMCG00020470
TU80130 other downstream 253766 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 848988 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 853073 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1325842 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3190927 27415996 ~ 27418520 (+) True G64730

Expression Profile