RNA id: TU80224


Basic Information

Item Value
RNA id TU80224
length 1922
lncRNA type sense_over
GC content 0.32
exon number 1
gene id AMCG00020559
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24691893 ~ 24698947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCTATTGAATTTTGTACTTTATTGCagggatttaattaaaatatacagacaacaactgtattttaaaagcacttcatatatattttttgtatattaatgtaGGACTCCTTTAACATTTCTGACTATCAAACcccatttctaaaataaaaataaaaacttcaacaCTAGACCCCCAGTTTACACTAACATGAAAGTAAACACACAAcagaattattaaaatgcaaacactgAGAACACAATTTTTAAAGACAGTGCAGGGGAAGCATTTTCATCGATGAGTGCAAAACCAATTACTGAGTAAAAGTGTTGATTGTACCAACAGGTTAAATATTTCCATTGTTTCTTGCAGACACCTCAGGCTATCCCTGAGGAACAATATGGGTAATTAGACCTCAGTTTGACAaacactgtattattgtttgtttatgttctgTATCTCTAGGAGTCCAATAAAACATTCTCTCTATTTTTAGAATTATATAGATTTagaaattacatatataaatatattcaaatagtTACTTTTGCAAAACTCTAGAAGGAAACAAAGCTGATACTGATTTGAATTGCATCCAAGCACATTCATTAGCAGCTCAAATATTACACCTGTGAATCACCTtcctatttaaatattcattataaacaCTCAGGTTATAATAGTACTCATAATGGGAGGAAGGTTAATACTTTtgcataattacaatatttacatactTTACATCGATTTAAAATATCCATAGCAAGATCAGATCATTTTGCTCATTGCTCTCTTTCTAAAAAGGTATTTTCTTGAATCGGTTTAAATCCATTTCTTACAATGCTCTTGTGGGTTCTTACTGGATGACCCCTGCTCGAAACTACTGAAATGAATTATTCCTCTTTTAAAGTCAAGCTTCACACAGCAGCTTCAAACGTATCAACTATTCCTTCTCAATGCCACTTTCAAACCCAAGGTCGTTTACTGATATTACATGGAGCAAAGCCTCTACCACAGTAGATTCATTTTTTATCTGGCAAAAAGAAGAGAACCATAAAAGGAACCCAACTGCCAGAGGAGCTTCATTGCAAGAGGTGAAACATCCTTTTGGCTTTTAGAAAATCCTTCACTTTTACATTGGTGTGTACACCAATCAGATTTGATTTTGCAGAGCATCTTTTCATGTTGAAAACTATGTCAAAGGCATAAATGTCAGGGTACATTAAAACCAAAAGACCAATGTTGAAAGCACAAACACATCAGCTATTACTGAAGAGTAATAtgcatgaaagaaaataaatatacaggaGTGAgttgaaaatactttaaattaatagtATTTACAAATAAGAACCAAAaggtatacaaataaaaagataaattatttcccccaatatatataacaaagtaCCCAGTACACTGGAGATTTATCAGATTGGGCAGTTTGCCTACAGTGCAATCACaccattttcctttaaattcaCAACAAGCACTGAGACACAATTACTTTCTGagcatctctctctttttgtgcATCTATGAGTTGTTCTAAAGGTGGAAGAAGATGGTGAGACTGGACTGTCAAAGCAGCTGtgtacatattaaacatttaggGATGCCAGCCTTGAAAGACACTTCTGGAATTTCTATTActcaaatataattattctcTTTTCAAAGTAGGTTTTATCTAGGGGATTTAATCAATTTTATCAATTTCTGTTCCAGTTCAGGATAAGGaccaaactattttaaataaccacactattatttaaaactgataCACCATTAAGTGCAAATCCTTTTTGTTGGCATCCCTATTTGTCATAGTTATTCCATCTCTTCTCAGCatacttattttgtgtatttatttaactcttTTCCACTATATGAAActattgttttgctgttgtattTGTACAGTTTTGGTTTTCTCGTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80220 lncRNA downstream 5882 24685524 ~ 24687760 (-) True G64120
TU80111 lncRNA downstream 388707 24304484 ~ 24304935 (-) True G64028
TU80091 lncRNA downstream 458515 24233642 ~ 24235127 (-) True G64013
TU80090 lncRNA downstream 460244 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 780421 23912862 ~ 23913221 (-) True G63921
TU80226 lncRNA upstream 5570 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 58319 24753882 ~ 24756305 (-) False AMCG00020560
TU80273 lncRNA upstream 159373 24854936 ~ 24856624 (-) True G64170
TU80292 lncRNA upstream 249735 24945298 ~ 24946210 (-) True G64186
TU80324 lncRNA upstream 305784 25001347 ~ 25001657 (-) True G64213
AMCG00020561 mRNA downstream 16647 24648003 ~ 24676995 (-) True AMCG00020561
AMCG00020554 mRNA downstream 57291 24631379 ~ 24636351 (-) True AMCG00020554
AMCG00020555 mRNA downstream 83569 24596511 ~ 24610073 (-) True AMCG00020555
AMCG00020548 mRNA downstream 107123 24578382 ~ 24586519 (-) True AMCG00020548
AMCG00020547 mRNA downstream 116741 24557613 ~ 24576901 (-) True AMCG00020547
AMCG00020560 mRNA upstream 60563 24756126 ~ 24776409 (-) True AMCG00020560
AMCG00020565 mRNA upstream 96379 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020564 mRNA upstream 119203 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020566 mRNA upstream 147447 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020575 mRNA upstream 251658 24947221 ~ 24950873 (-) True AMCG00020575
TU80215 other downstream 15832 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1531742 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2148953 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3381037 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6653682 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 415547 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 425535 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 513496 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 546606 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 578978 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile