RNA id: AMCG00020579


Basic Information

Item Value
RNA id AMCG00020579
length 3625
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00020579
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25269543 ~ 25275985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCCCCCTGCAGTGGAAGTGTGGCCTGAGCTGGAGAAAGCCGAGCTGCTGGCCAGGGGAGCGGCGCTGAAATGGGCGTCTGGAGTGTTCTACCGCCCGGACCAGTTGGAGAGACTGGCGCAGTACCGCAAGAGAGAGAGCCAGCGCACCTCCACCATACACTCCAGACTCAAGtctgtggtgcAATCCTACCTGGAGGGGGTGGGCTGGGGGCTGGAGCAGCTGCGCGGGGCTCGGGGGGCGGTGCGGGAGGTGTCCTGCGCGCTGGGAGAGGTGCAACGGGAGTGGAGCGCTGCGGGTGGCTTCCTCTCTCTGGAGCGCCTGCGGGAAGTGGCCTCGGAGCACGAACGGCTGCGCACGGCCGTCAGCAACCTGCCGCGTCTCTGCTCTGtgccCACAGTGGTCAGTGAGACCCAGCATCTGATCGAGTCGCGGCAGCTGCTGGAGGCCCACGCCAAGCTGATGGAGCTGGAGCGCTGGCAGGACGACGTGCACTGGCAGCTGCACCGCGTCCGGGGGGGGAAGCCCAGCCCCGAGGAGGAGGCCCTGGTCCTGAGCTACTTCTCAGGAGTGCCGCAGCTCAGCAAGGCCCTGAGCCGGGAGCTGTGGGCCGTGATCGGGAGCGGGCTGGCCCTGGCACGGCAGGACCCCGTGCCCTTCGTGTCCGCGGTGCGCATCATTGAGCGGGAGGAGGCCATGGACCGGGCCTTCCTGGAGCAGCAGGCCGCCAGCTCCCGCACGCTGCCCCCTGGGCGGCCCCGGCAATGGCGGGCACGCTTTTTCTCTGTGATCGAGGAGGCCATCTCGACCCGCTTCAGGGCCACCTACCTGGACGTCCGGGGCCCTGGGCTGGCCAGTCATCTCAGCGCCTTACAGAACAGCATCATGAGCGATCTGACCACCACTAAGCACCTGCTGGAGCAGTGCTGCCCACCCCACTACTGCATCACCCGGGCATACCTGCTCAGGTGCCACAAGTGCCTGTGGGCCCACCTGCAGCAGGTGATCAGCTGGGAACTGGACAGCAGTGAGATCTTTGCTGTGCTCAACTGGGTGCTGCATGTCTACCACAGCCCGCAGATGATGGGCCATCCTGACCTGTGCTCGGAGGTGGAGCCTGATGACCTGGGTCCCCTCATATCTCAAGAGGCACTGGAGCAACTACAGAATAAATACGTCAACACTGTGAGGAGCAGCGTGTCTGAGTGGATGCACAAAGCCCTGGAGGTGGAGCTGACAGACTGGCAGAGAGACCAGAAGCCTGACACTGACCACGAGGGCTTCTACCACACCAGCCTCCCCACCATCATTACACAGATGCTGGAGGAGAATGCACGAGTGGCCCTGAAGATTAGCGAGGCGCTGCGAGACCAGACTATCTACATGGGCCTTTATGAATTGGAGAGCTTTCTCAGCAGGTTCCGGGACGCACTGGTGAACTTTGGGAAGGACCATCAAAAGGACCGCACAAGTCCCAAGTACTACCTGCACTACCTGCTGGCAGCCATCAACAACTGCATTGTCCTGAAGAGCTCCATTGAGAGCCTTGAGCAGCAGCAGAGCAAACCCTGCCACTTCAACAGAACCCATCCTGGCCCACAGGTGGCGCTGGAGCGGGCCATCAAGAGAGGCTGCCACCTGGTCATCGACGAGCTGCTCCTAGAAGTGCAGCCCCAGTTCCTGCTGGTTCTCTGTCGCTCCTGGCTGGAGGACGGCAAGCCCTTAGACATGCTGTGTGGAGCCGTGGAGCAGCAGTGTGATCTGTACAGCCACctgctgagAGTGGAGAGTCAGTGGGTCCTGGTGGTGGAGTACGTGCGAGCCCTCATGCAGAAACGGATGGTGTGCCGCAGCGCTGAGGAGCGTGGCAAGCTGGCCAACAGGATGGCGCAGGACGCCCTGCAGCTGCAGGAGCTCTTCCAGACAACGGATGACGAGCAAAGGAGCAGCAGCCCCCAGGCGAGGCCAGGCACCGAGACGCTGACAGCGCTGCTACCTGCACTAGCCGAGATTATCCACCTTAAGGACCCCTCCATGCTGACCCTAGAAGTATCTGGACTAGTGGCCAAATACCCCGACATCAGATGGCAAGTCCACAGACATTTAGCCCTAGAACAGAAGGTAGCATTGAACAGAACGCCAGTGACAGATGCACTGCAGGCTGGCAGGTCTAGTGAGGAGCACATCTCTGTGTTGATGGACATTAGGGGAGATGTCCCGAGGGAAGTGCGCGGGACAGTCCTGGATATGCTGGAGCAGAGCGCCCCACCTCTGCCGCCAGGGTACCGGCCCGTTTTCACCAACATACTGGTCCCTCCTCCCAGCATGTCTTTCTGCCTGCCCACAGTCAAGTGTGCCTGAAAGCGCACTGCAAACATGTGCACGGACTGAGCCAGTCAGCGGAGAGAGGACAATCACTGTGGGGAACTATTTAAGGAAGCGTTTCTCTGACTGGAGACTAAAATCTTCACACAGACAATGcaggacatttttaaagaaacaaaaaaagaaaatagatatCACCCTCAGAAATAATGCATAAAACCACTTCACTGTCTAACCACAAGACATGCCAGAGCTCAGATAATTCAAGCATATTTTGCATTCCAAGTAGACCAGACTCCCTGGTAGCCATATGTATTTGTGTCTATGATCTGATGCTGGAAACGTCTTCTTCCTAGATCCTATGAAGGAAAGTAATGTTTGATGGTTTTCTGAAGTAGAATGGAACTGTCTGTTTGCACATCTTTGCTCACTTATTACATGTTTCTGAAGTGGGAGGGTCCCTCTTTAAAGTGGCAACAGGTTTGATCCTGAGGAAACACTGAAGATTCCTCTCAAAGTCAATGTGAACAGAACTGTGGATAGAAATTCCATATGGTTTTCTTGCATGACTGTCAATGTTGTCTTATTTCAAACAGTCAGTCAGTTTCtttaattgtgtatatgtggctaaatgtttttatatccaTTTAGCAGCCTTAGAAAAGAATGCATCTCTGCTTCATGCAGTAGCAATGTGCCACATGGCAGCTGGAGGTATGTTGCTTCATTATAAATTGTCATGCAAGTCCCTTAAACCAGGACAGTACAGAAGACATATCTTCAGCCTCAAAGTTGTCTATAGTAGAACAAAATCAAGGGCCTTTCCTAGGGAAAGACATCCTTTTTGTAGGTTTCAACCAACTTTCTGCAACCCAGCTGTCAGGTTGCCTGCGTCAGGACTTGTGATGTTAACTGGCTATTTCATGTACAGCTCCACCCACACCGGGCAATGATTGGACACGCTGCCCCCCCAGGACCATCCATCAGGAATCCAAGGACTGGACAGTCCAGTTTGGATCACCCCCCAGCGCCCTGCAAGGCAAAGCAATACTTGTGAATTACAATCTCGCACTGCAGCCCATCACAAGTCACACATGGCCTATGAATGCACATAAGCACAGCAGCCAGCCGACTCTGACAGGATGGCAGCACACTAGACTCAAATCTTTGCAACTTCCCAATCTGACTGTTGGTTTggttacatttgtttacattaccCTTACAGAGGGTTGCTTCAGCTAAAATTACTTAACCACATGTgcaattcaaaaaaataaatgaaaaaaggatATCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80399 lncRNA upstream 3336 25263406 ~ 25266207 (+) True G64269
TU80398 lncRNA upstream 3392 25263406 ~ 25266151 (+) False G64269
TU80341 lncRNA upstream 172646 25096482 ~ 25096897 (+) True G64226
TU80339 lncRNA upstream 176513 25091792 ~ 25093030 (+) True G64224
TU80335 lncRNA upstream 188664 25078142 ~ 25080879 (+) True AMCG00020573
TU80432 lncRNA downstream 54096 25330081 ~ 25330558 (+) True G64297
TU80436 lncRNA downstream 56274 25332259 ~ 25333177 (+) False G64300
TU80435 lncRNA downstream 56635 25332620 ~ 25333682 (+) True G64300
TU80482 lncRNA downstream 183233 25459218 ~ 25459796 (+) False AMCG00020585
TU80515 lncRNA downstream 259768 25535753 ~ 25536047 (+) True G64362
AMCG00020580 mRNA upstream 7043 25252878 ~ 25262500 (+) True AMCG00020580
AMCG00020578 mRNA upstream 30223 25221825 ~ 25239320 (+) True AMCG00020578
AMCG00020577 mRNA upstream 62972 25188322 ~ 25206571 (+) True AMCG00020577
AMCG00020582 mRNA upstream 108016 25152851 ~ 25161527 (+) True AMCG00020582
AMCG00020573 mRNA upstream 184670 25078864 ~ 25084873 (+) False AMCG00020573
AMCG00020584 mRNA downstream 60890 25336875 ~ 25339801 (+) True AMCG00020584
AMCG00020583 mRNA downstream 73744 25349729 ~ 25360490 (+) True AMCG00020583
AMCG00020587 mRNA downstream 90864 25366849 ~ 25369735 (+) True AMCG00020587
AMCG00020588 mRNA downstream 100196 25376181 ~ 25392861 (+) True AMCG00020588
AMCG00020586 mRNA downstream 129649 25405634 ~ 25458095 (+) True AMCG00020586
TU80336 other upstream 184789 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 192853 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 787429 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1213951 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1215666 24051989 ~ 24053877 (+) False G63939
TU80525 other downstream 274926 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2140011 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3597645 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3732678 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 4188579 29464564 ~ 29465712 (+) True G64979

Expression Profile