RNA id: AMCG00020581


Basic Information

Item Value
RNA id AMCG00020581
length 753
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00020581
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25111110 ~ 25119596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAGACTCTCCACACTGAGaaactcctctcctctccatctctccagaGCCGCTGAGAATGAACGCCCTGACCTGCGCCCTGCTCCTCACTCTGCTCTGCACAGTGCATTGGGCTTCCTCTCAGCCTCAAAGCACAAACGCTGGCAATCCATGTTGCCCAGAATTCATCAAACACAGAATCCCTAGGGATGTGATTGTATCCTACTGGAAGaccagcagcagctgcagcaaatCTGCAGTCGTCTTTGTGACATCCCAAAAACAGATGTGTGTGGACCCCAGCCTGCACTGGGTAAAACATCATATGAAATATGTGGACCAGAAGATGAAAACATCCCCCACAGCCAGGCCCTCCACTGCCACGAAACAGTGATGTTGAACTTGAAATTCAATGTATCTGCAGTCTGTTTCCAAACAGAAGTCTATATTAGTTAAGATCTTCTCAGGTTCTGATTCTTTCTTAACACAGTAGCATTAAGAGCAATTTAGGCCAGAAAACTCAATCCATTGCCGTGTATcaattgtacatattttatttattttacttttattttatttgcatggatttggttttgttcaggtgcatattttcaaaaagaatatttaattaagtgattcttcaaaacatttatagATAGCTAAAATAAGACAAATTGTATAATTCTCCAAATTGTATAGTTtttcatatgtttatttttataattggttatccttgtttttcattaggaataatgtattgtatttgtattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80357 lncRNA downstream 10024 25100037 ~ 25101087 (-) True G64238
TU80354 lncRNA downstream 16785 25094031 ~ 25094326 (-) True G64235
TU80332 lncRNA downstream 46769 25064136 ~ 25064342 (-) True G64221
TU80329 lncRNA downstream 58659 25052204 ~ 25052452 (-) True G64218
TU80324 lncRNA downstream 109454 25001347 ~ 25001657 (-) True G64213
TU80368 lncRNA upstream 23945 25136432 ~ 25139385 (-) True G64247
TU80380 lncRNA upstream 90637 25203124 ~ 25216693 (-) True G64258
TU80404 lncRNA upstream 149439 25261926 ~ 25264235 (-) True G64274
TU80488 lncRNA upstream 348940 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 351053 25463540 ~ 25464116 (-) True G64341
AMCG00020574 mRNA downstream 109983 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 160238 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 264683 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 290050 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 310328 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020589 mRNA upstream 160106 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 177015 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 213306 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 218586 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 360768 25473255 ~ 25479762 (-) True AMCG00020594
TU80215 other downstream 433301 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1949211 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2566422 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3798506 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 7071151 18037042 ~ 18039960 (-) False G62961
TU80367 other upstream 8611 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 96572 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 129682 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 162054 25274541 ~ 25276417 (-) False AMCG00020589
TU80419 other upstream 186315 25298802 ~ 25302981 (-) False AMCG00020590

Expression Profile