RNA id: AMCG00020585


Basic Information

Item Value
RNA id AMCG00020585
length 2937
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00020585
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25459096 ~ 25472886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGCCTGGGGGAGGACAGCCCATCGCGCACTGCGTCCTTTGGCCCTCTCGTCCTGGGACTGGCGGAGACTCTTATTTTGAAGGGGGTGAAGCGGCAGTGCGCGGAAGCGGAAGTGAGCGGCGGACAGGCGCCGGGACGCGGGAGACGGACGGGGAGGACAGTAACAGCTCTGCGCTGCGCACCGTCGCCTCGTCTGCACTGGTCACTGCAATTCGGTGGAGGTGTGAGCTGCAGCCGGGGCGATGTGGAGTGCAGAGGAGGTGGCGAGGCTGTGCTATGAGCGCTACGGTGCCCTGCCCAGGACAGGAATGCCACAGATGGGCAGGGAGTGGACTCTGCTGGCCGCTGTGGTGAAGATGTCCAGCAGCCAGCAACACCAAGCTGCTCCAGAGGTCGTCGCTTTGGGAACAGGAACGAAATGCATCGGCCAATCTAAAATGAACGGCCGCGGCAACATCCTGAATGACAGCCATGCTGAGGTGGTGGCCAGGCGGGGGTTTATTAGGTATCTGACTGAGCAGCTGCGAGGGGCTCTGAAGGGGCAAGACAGCGGCATCTTCAGCCCAGGAACAGAGAGGAGCAGGTGGAGACTGCGTGGGGACGCCTCTATTATCCCTATGGTGGCGAGCCAGGATCAACCCTGCCAGCCAATCAGAGCACCAAGTGACATCACTGATCACCTGACCAAGGGCAAGAGTGGGGTTGAGGCCTCGCCCTCAAAACGGAAAGCAGAGGAGAACGGGGAGCCAGTCAAGCGCTTAAAAACATGCCCCTTGGATTGTGCGGTTGTGGGGGAAGGGGGCTCTGTGCTCGGGGAGGAAGGCTCTGATCCTCCCCATGGCAGCAGCACAGGATCTGGCCCGGGCAGCTCGGAAACAGCCCCTGACTCCAAGGGGCCTGATGTACACAGAACCGGAGCCAAGTGTGTCCCAACAGCCAAGCAGGACCCCCTTCGGCCGGGGGAGGGCTACCACTGCGTGGGTGTGCTGCGGGTGAAGCCGGGTCGAGGCGACCGCACCCTCTCCCTGTGCTGCAGTGACAAGCTTGCGCGCTGGAACGTGGTGGGCTGCCAGGGGGCGCTGCTCTCCCACTTCCTGCAGGAGCCGATCTACTTCAGCGCTGTCGTCACCGGGGAGTGTCCCTACAGCCAGGAGGCCATGAAGAGGGCGCTGATGGACAGGTGTGCCCATGTGACAGACCTGCCCCCTGGCTACTCAGTGCGGGCCCCGGAGCTGCGCCACGCCAGCCTGGAATTCCCCCACAGCCACCGACTGGTGCAGGGCACCCACGACAGCTCCAAGGGCCGGGTGACACCCTGTGGAGCAGCCATCAGTTGGTGTGCTGTCCCTGATCAACCACTAGATGTCACTGCAAACGGCTATAAGCAAGGAGTTACTAAGAAAGCTCTGGGCACGGCTCAGGCCAGGTCTCTCATCTGCAAGGCTGAGCTCTTCAGCAGCTTCAAGTCCCTCGTGGTGTCCGCCCTGGAGCTCCCAGACTCCCTGAGGGGGAAGGAGCTGAAGACATACTGGGACTACAAACAGGCAGCTGAGGGCTACCAGAAAGCCTGGGAGAAGCTCAGAGAGCAGGCCTTCAGCGAGTGGGTCCGCAGTCCCAGGGAGCTGCTGCAGTTTGAGTGAGGGATCCACTGGGAATACAGCAGGTAACACTGACTCGGACAGCTTTGAGCAGCCCCTGTGGATAAACCCTGAGGGCAGACTCCCGGCCGTTACGGTCCGCAGCTAACTAGCCAGCATCAGAGGTCCCTTCCGTAGGGGAACACCAGGGCTAATCCAGGACCAAACAGATGGTTCCTCAAAGGAGCAGCCCTTTTCACCTGCTCACTCGCACAGCATTAAGACGTGACCATAAGCAAAATCGGTGCTCTGTGTGCGATGCTGCTTGTTATGCTGTCCTCAAGACAGACACGCTTGCCTATAGAAAAtccttctaaaatgtttttcccGTCGGACAGTTTTGGGTTTGTTCCACTCATCAGACTTTTGCTCCATTTGTCTTTTTCagtcttttgttttataaaactgtttgtgaaaaaatctaaagtgtttatttgtgccttgttttttgcttttctttctgatgagatttgtattatttgtgtaatgTTAAGAAACCTTGCTAAGTGTTAGCTTTAATGATTTCTTTGTAAATGCTCTGTTCTCATCAGTGGAATGATTGACAAGATGATTTTGAACTCCAGGATGTCACAAACACGCCTATATCTATAAGCCTGGCCTTGCAACATCAAACACACTCAGTCTTGGAGGAGGCCACACCCCAGACCCGAACGTATGGTGAGACAATAATTCCACCATTTGTTGTGAGGGGTGGGTTGCATGTGATCGTATGACAGCAATCCGATTTGGTGCTCAAGGACTGACACAAAATGCATAGAAGATAGTGTGTTCAAAGATATCCCCTCCTTGaatctctgtgaaatactgGTCTGTTCTTCAGCCCTGTCTAACAGTTATCACAGACAGTCAGAAGGAGCGGTGACTGAAAATGCCCAGTCTTGCATGGCTGTGGAATGAACAGGCTAAAAGTCCACACTGTGCAGAGGGATGTTATTGAAGCTGGAATATTGACAGAAGGGAATCATCATTTCAGAGAAGGCACATTCCAGAACACAATGGACACTCTGTTCAAAATACCCGTCCTGCTTACGGTGTGACCTTTGCAATCAGGGGGAAcacatatttttcttgtttttggttttcacGATGCTAAAAACGAGACTGATGACGTCCTGAGGTATGAGCCACATATCACGCAGTGCTATAGCAGGAAATTGGGATATTTAGAGAAATGAAAACAGTCTGCTTTGCTTGATGATTGAAAGATTGTGTGTGGATGCTTCCTGTGGAGAATAATGGAAACACTTTTTATTGCCTCAAACTGCAGGTGATTAAAG

Function

GO: NA

KEGG:

id description
K15440 TAD1, ADAT1; tRNA-specific adenosine deaminase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80435 lncRNA upstream 125414 25332620 ~ 25333682 (+) True G64300
TU80436 lncRNA upstream 125919 25332259 ~ 25333177 (+) False G64300
TU80432 lncRNA upstream 128538 25330081 ~ 25330558 (+) True G64297
TU80399 lncRNA upstream 192889 25263406 ~ 25266207 (+) True G64269
TU80398 lncRNA upstream 192945 25263406 ~ 25266151 (+) False G64269
TU80515 lncRNA downstream 62867 25535753 ~ 25536047 (+) True G64362
TU80531 lncRNA downstream 96504 25569390 ~ 25571762 (+) True G64378
TU80553 lncRNA downstream 167707 25640593 ~ 25643374 (+) True G64394
TU80568 lncRNA downstream 249047 25721933 ~ 25728334 (+) True G64406
TU80576 lncRNA downstream 303521 25776407 ~ 25778982 (+) True AMCG00020603
AMCG00020586 mRNA upstream 1001 25405634 ~ 25458095 (+) True AMCG00020586
AMCG00020588 mRNA upstream 66235 25376181 ~ 25392861 (+) True AMCG00020588
AMCG00020587 mRNA upstream 89361 25366849 ~ 25369735 (+) True AMCG00020587
AMCG00020583 mRNA upstream 98606 25349729 ~ 25360490 (+) True AMCG00020583
AMCG00020584 mRNA upstream 119295 25336875 ~ 25339801 (+) True AMCG00020584
AMCG00020593 mRNA downstream 15061 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020596 mRNA downstream 58290 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020600 mRNA downstream 106819 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020599 mRNA downstream 128234 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020598 mRNA downstream 208730 25681616 ~ 25687176 (+) True AMCG00020598
TU80336 other upstream 374342 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 382406 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 976982 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1403504 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1405219 24051989 ~ 24053877 (+) False G63939
TU80525 other downstream 78025 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 1943110 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3400744 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3535777 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3991678 29464564 ~ 29465712 (+) True G64979

Expression Profile