RNA id: TU80419


Basic Information

Item Value
RNA id TU80419
length 484
RNA type TUCP
GC content 0.69
exon number 2
gene id AMCG00020590
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25289502 ~ 25302981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGTCCGGCCGCGTCCTGCCTGCATCAGCGGCTGTTCCCCCGGATCCCTCCAGCCGCCGCCTCCGCCGCCCTGCGAAACACGCCATGCAGTAGAAAACACAGCGGATCCGCAAACCACAGCCAGGTGGCTTGTCGTGGGGGGAGAGTGGCCAGGCTGCCGTGATGGTGCTGGACCCTGGCGGGGGCTTGGTGGAGAGAGCGGCAGGAAGGGGTACCCTGTCCGCAGAGCGGCCGGGTACCAGCAAGAGAGAGACGCCACGCAACGGCATGAGGCCCCATCCTTGGTCTGCCTCGGCATCCTTCAGCAATTCCAAAGGGATGGTGGGCTCCCGGGGGGCTGGTGGGGAGGAAGGGAAGGCAGCGGGGGCGGAGGTCAAGCGCCCCATGAGCCTGGAAGTGAAGCAAccgaaggaggagaagaaggggCCAAGCTGGCGGAGTGGCCGTGCGCCGGGGCCCCCCTCCCGCAGCCTCACCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 34567 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 82109 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 159417 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 179206 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 197715 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 158446 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 160559 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 161896 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 337589 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 388427 25691408 ~ 25779211 (-) True G64418
AMCG00020589 mRNA downstream 14593 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 186315 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 297674 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 347929 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 452374 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020592 mRNA upstream 22812 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 28092 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 170274 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 248609 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 262602 25565583 ~ 25574610 (-) True AMCG00020595
TU80414 other downstream 22385 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 56291 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 87739 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 159417 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 186251 25111110 ~ 25112551 (-) True AMCG00020581
TU80433 other upstream 27103 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 595447 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 595447 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1943033 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2923554 28226535 ~ 28229647 (-) True G64811

Expression Profile