RNA id: AMCG00020594


Basic Information

Item Value
RNA id AMCG00020594
length 1235
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00020594
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25473255 ~ 25479762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTCCTTTGGTGTATCACCTAGAACACCGATGTGTGGAGTCCGCCAAAATCCGTGCCAAGTACCCAGACAGGGTCCCGGTGATTGTGGAGAAGGTGTCTGGCTCTCAGATCGTGGACATAGACAAGAGGAAGTACCTGGTCCCCTCTGACATCACAGTCGCTCAGTTCATGTGGATCATCAGGAAACGCATCCAGCTGCCCTCGGAGAAAGCCATCTTCCTCTTTGTAGACAAAACTGTCCCTCAGTCCAGCTTAACAATGGGCCAACTGTACGAGAAGGAGAAGGATGAAGATGGCTTTTTGTATGTTGCTTACAGCGGAGAAAACACTTTTGGCTTTTAGACGTTTGTGCTTGGCTTGTGACACTGGCTTTCCCCCTCtccacactcactctctctgacAAGCTTGATTGTACTATAGACATATACTGGCATtttggaaaagggaaaaaaagaaaaaaaaaatcacttaacCGTATTATGGATGCATTTGTAACTCTGGTCCTATCCCCTATTGTATTTAAGCTGTAAACATTATTagattgttaaattatgttcaAATAAGTGACTTTTTCTGTTCTCATGGCTGTGAATTGTTTTGCTAGCTGTATTTTATTGGAATTgcttgctgtttttattttcatttgacttttGTTGTTTGAGATTGTTTCTTTCAAGATTATATTTCAGAGAAATACGTTTAAATATTGAACGGTAAGGTAGCTGGATGACCTaaccaataaaaacattaaaactcgTTTCTTTGGACACGGTTATTGGTTTTAATCTAAAGTAACATTTCCGACAAAAACATTCCTTTAGGGAAGGGGTTTCAAGCTCCTGGTTGCTAAACTGGTCTAGTGAGCCGACTAATTGGGTTCCTTAAGTACTTCTCATGAGAATCCGCCATGTTTTATTGACGCTGTACCATAAATCAAGTATATCTTTGCAATCATCAGCTAGAAACTAACTCGCTGGGGGGGGATTTATCCAGTTGAGAAAATTATTAGTTTAACAAAGTACTCAAGTGTGGATTGAAATATTTGGTACCATTTCTTGTAAATGTAGCTCGCTCTGTCTCTCACTATAAAAGCAATAAAGCTAGTTGATTAATTTCAGTGTAATCGGAgtagttaataataacaaatgccATCCTAGTTCATTATTTCACTTGGATATAATTTTACAGGCTTTTCCGTATTCTGTGGGGGGGAACTCGTATCAGTGTTTCAG

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80490 lncRNA downstream 7905 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 9139 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 11613 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 209020 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 256562 25203124 ~ 25216693 (-) True G64258
TU80578 lncRNA upstream 160808 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 211646 25691408 ~ 25779211 (-) True G64418
TU80595 lncRNA upstream 234373 25714135 ~ 25715457 (-) False AMCG00020604
TU80596 lncRNA upstream 234373 25714135 ~ 25714923 (-) False AMCG00020604
TU80665 lncRNA upstream 415390 25895152 ~ 25895866 (-) False AMCG00020614
AMCG00020591 mRNA downstream 124937 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020592 mRNA downstream 143410 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020590 mRNA downstream 170283 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 189046 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 360768 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020597 mRNA upstream 71828 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 85821 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 110252 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020602 mRNA upstream 163985 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020604 mRNA upstream 207513 25687275 ~ 25714902 (-) True AMCG00020604
TU80433 other downstream 142685 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 170274 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 196838 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 230744 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 262192 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 418666 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 418666 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1766252 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2746773 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2845545 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048881 True 1079 mRNA 0.42 4 NC_007136.7 34835553 ~ 34845302 (-)
grasscarp (Ctenopharyngodon idella) TU428312 True 1537 TUCP 0.39 1 CI01000179 216959 ~ 218495 (-)
eurasian perch (Perca fluviatilis) TU250105 True 1340 lncRNA 0.44 4 NC_053129.1 16125385 ~ 16145169 (-)
tiger barb (Puntius tetrazona) TU250105 False 838 TUCP 0.43 4 NC_056723.1 12477408 ~ 12481508 (-)