RNA id: AMCG00020603


Basic Information

Item Value
RNA id AMCG00020603
length 1719
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00020603
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25762135 ~ 25778982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTTACATCCGAAGTGCGACCATTTGCGATTATTAGCAGTGAGGCCTCCTCTTGTTGACTTCTACCTCCTGGTTTCCTTCTCCCGCAAGGTGGTGCAGTCCCTTGGCTTCGCTATCTACCGGGCTCTGGACTGGGGACTGGACGAGAGTGAGGAGCGAGAGCTGAGTCCCCAGCTGGAGCGTCTCATTGAGCTGATGGCAGGGGGGGAAAGTGAgggcggcagcagcagcggcaCCGCAGACGAGGGCTACAGCggccaggaggaggaggaggaggcagaggggcCGCGCCGCGCAGTGCGCACCTTCCACCAGGTGATGGCGGTGTGTGCCGCCCGCCTCGCCAACCCCTCCCAGGCCCAGGAGCACTACCAGGCTGTCAGCAGGGCCCTCTTTGTGGAGACATTGGAGCTGCAGACCTTCCTGTTCAAAATCAGAGATGCCAAGGAGATGCTTAAGAAAATCCGAGCTGAAGAGAAGCCTGAAGAAAGACCCACGGATGAGCTGGACAACCTGCGCCACACCGACTGGGCCCGCCTTTGGGTCCAGCTGATGAGAGACCTCCGCCATGGCGTGAAGCTAAAGAAAGTGCAGGAGCAGCAGTTTGACCCACTGCCCACCGAGTTTCGCCTCACGCCCTTCGAGATGCTCATGCAGGACATCCGAGCTCGCAACTACAAGCTGCGCAAAGTCAtgGTTGACGGTACCATTACAACTCGAGTGAAGAAAGACGCCCACGAGCTGATCCTTGATTTCATCCGGTCACGACCACCACTGAAACCTGCTTCTGAGCGCAGCCTGAGGCCCCTGCCTGAGAAGCAACACACCCTTCATGAGAGGATACTCGCTGAAATCCGTCAGGAGAGGAAGCTGAAGCCAGTGGAGCCCATTTGCCGAGGAAGATCGTTCGGCTCGCTGCCCTGTCTGGTCCATGCCTGCTCCTGCACTGTGAAGTCCACATCCTGCATCAACCTCTCCATCTCTGAAGGGGCCAGCCGCCCTGCACCTCAGCGACCAAGAATCCTGCTCAAAGCCCCCACATTGGCCGAAATGGAAGAGATGAATATATCAGAGGAGGAGGAGTCGCCCAGCGGGGAGATGAGGAGGGTGGAGAGCTCTCCAGTGCCTCTGAAGAGGGACCGCTCGTTCTCGGAGCACGACATCGCTATGCTGCAGAGCGAGATGACGCTGTCCCACTCTGATCTGTGCCACACAGTACTGATACGGTCTCTACCTGCCCGGGGGCGTCCGAGTTACTCCCCGGGGACGTTCTCTCCGGGCCGAAGCTCCCTCAGCTCTGTTGAAGAGAGGACTGAGGCTGATGGCAGCTCCCCTTTGAGACAGGGCTCCAAACATCAATGGATGGAGGAGTTCAGCCACCCAGTGGAGAGCCTCGCCCTCACCATTGAGGAGGTCATCAATGTGCGAAAGGTTCTGGTCAAGGCCGAGATGGAGAAGAGGACACCCCATAATGGTCTCTcgtgtccctctccctcccccaggtCCCTGCGCAGCCTCACGCGGCGCTCTGTGGAGGAGGAGTTCCCTCACCTCTATGCCAATGGCTGCAGCCTGAAGGACATCTGCTCTGAATGCACCAAGTTTGTGGGCGACGTCATCACCTCGAGCCGCAAGAGCCTGGACATCCTGAACAACACGCCCAAAAAAGCCCAGTCAGTCCGGGCACCCCCAGGGAGGAGTGCCAAGTACAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80568 lncRNA upstream 33801 25721933 ~ 25728334 (+) True G64406
TU80553 lncRNA upstream 118761 25640593 ~ 25643374 (+) True G64394
TU80531 lncRNA upstream 190373 25569390 ~ 25571762 (+) True G64378
TU80515 lncRNA upstream 226088 25535753 ~ 25536047 (+) True G64362
TU80482 lncRNA upstream 302339 25459218 ~ 25459796 (+) False AMCG00020585
TU80613 lncRNA downstream 41874 25819391 ~ 25819782 (+) True G64436
TU80641 lncRNA downstream 116633 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 157388 25934905 ~ 25940113 (+) True G64478
TU80711 lncRNA downstream 317146 26094663 ~ 26096921 (+) False AMCG00020621
TU80767 lncRNA downstream 417696 26195213 ~ 26197405 (+) True G64555
AMCG00020598 mRNA upstream 74959 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020599 mRNA upstream 151745 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020600 mRNA upstream 173384 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020596 mRNA upstream 229772 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020593 mRNA upstream 269840 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020609 mRNA downstream 4531 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020608 mRNA downstream 32649 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020606 mRNA downstream 62187 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020607 mRNA downstream 77571 25855088 ~ 25861732 (+) True AMCG00020607
AMCG00020616 mRNA downstream 99738 25877255 ~ 25885079 (+) True AMCG00020616
TU80525 other upstream 208815 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 677381 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 685445 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1280021 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1706543 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1638479 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3096113 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3231146 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3687047 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3748198 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048063 True 2131 mRNA 0.56 11 NC_007136.7 34889061 ~ 34907655 (+)