RNA id: AMCG00020604


Basic Information

Item Value
RNA id AMCG00020604
length 5197
RNA type mRNA
GC content 0.51
exon number 36
gene id AMCG00020604
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25687275 ~ 25715457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGCTGAAGCCACTGCGTCCGGAGCGCCGTCACTCTCGTCGCACAAGCCGAGGCCAACGCTGTCCGCTATACTGGCGGCTCGTGTGGGAAAGAAGAGGCCGAGGTATGAAAATGTACaagagctgcaggaggccaCTGTCCAGCTGTTAAACCATCACCAGAATCTCAGAGACCTGCTTGTTGAGAAGCCTCCTATCCTTGAAATGGTCTGGCGTCTGCACAAGGAGAACATTGTTACTTTGGAGGAGATTCTAGAGAGCAGTCCGAGCAGCTCTGTGGCAGTGGAGTGGCTGTGTGCTGACCTGCGTGTTCTCTGCGGTCAGCTAGGGGAGATTGAGGTCAGCCAGCAGATACGGTCTGTCTCTGATGCTGTTGGCATGCAGTGGAAGTGGAGTTTTGCTAAAACCTGCCCTCTGCTGACGTCTCTGTATCGGAAGCTGTTTGTTCTGTTCAGTGTGGAGGAGCTGATGGCCCATTTGCAGCAGGTCCTGGAGACTCATGAGGTCAACTGGCAGCACATACTGTCCTGTGTGTCCACACTGCTGGTGTGCCACGCACAGGCACAGCACAGCCtcaaagATCTGCTGACCCGCCTCTTGAGCAATGCATTCGAAGCATATGACCTGGAAAGCATGATCACAGCCTTCCTCCTGGCTCGGCAAGCGTCCCTGGAGGGTCCGGCAGTGTTCATGTCCTACACAGAATGGTACAAGCTTTCCTTTGGGAATGCCAGCAGTTACCATGGAAACAGTAAAAAATCCCTGGTGTTTCTGCTCAAGTTCCTGTCGGACCTGGTGCCGTTCGAACCGCCGCAGTACTTGAAGgTACATGTGCTTCATCCTCCCTACGTTCTCACAAAGTATCGTCCCTTCCTCTTGGAGTACGTGTCCCTGGCCAAGACCAGACTGGCCGACCTCAAGGTCTCTATAGAAGAGATGGGCCTTTATGAAGATCTGTCAGGAACAGGAGCACCAGCACAGCCCCAGTGTCAGGCCCAACAGGATGTGGAGAAAGCTGTCTCTCTGTTTGAGAAGACGGGCAGGATCCCCGCCAATGTAATGGAAGCAAGtatttttagaAGACCGTATTTCATGTCTAGGTTTCTGCCAGCCTTGCTGACTCCACGCTTGCTACCTAGCAAACCAGACCCTCGGATGTCTTTCATCGAATCCCTCAGAAAtgCTGATAAAATCCCAGGGAATGTGTACACTGCCTATGTGCAAGGCTGTCAAAAAGAGGAGAGACAACTAGAggGTGGGCATGTGGAGGTGGAAGTGATACTTTCCACAGAGCccctggaggagctgaaggcCAGACTGAAGGAGATGACGTCCCTGCTGTCTGGAGGTGTGAAGGAAGGGGATGTATCAGCCCACCTGGCGCTGCTCTCCGAGACCCTGAAGAGCTTGCTTGGTGAGACGAATGAGCTACCCACAGAGACGGCGATGAAACTCGATGTCGATGCGCCCAGCTCGGAGACCCTGCTGACTAAACTCACCAACATTATCTTGAAGAGCTTTTGCCAGAACCTGATGGATGCCTCCAGAAAAAATCCCCCACAAAGCCAAGGAAACTGGGCTTCTCTATTTGTGAAGATGCTTTATGGGCATAGACAGCTTCTGCAAAGCCTTCTGACCAGACTTTGGAATCTGTTATGCCACCAGGGCTCCTCCCTGAGTGCAGGGCATGTCTTGGGACTGTCTGCGTTTGTGGTTCATCTCCATGAGTCCCAGGCTGTGGCTCCCCTGGTGGATTTGGGCTCCCTCAGCCCTCGCTTGTGTCCCTTTGCTGAGGCGGTGAGTGGCTCTCTGCTGTGCAACACTGAGGAGACCATGACCTTCTGCTTGAGGTTTTGCATAGCAGCTGTCTCCTATGGGCTGTGCAGATGTGCTTCTTCATCTGTCGAGGACATCCAAGCCTACGTGCCTAAGGGGCTCTTCAGGAAGCTACTATACCTGGTTCCCCGGCTGGCTGCAGAGATGCGGACGGGGACactgggggagggagaggagagtgtGTGGGCTGTGCTGAGGGATCCCTGCTCCTCCTGGAAGAGCTCTGCCCTGGCCCTATGGAAACACCCCAACTTCCAGAAACTTCAGCAGCTGCCAGATCTCCAGCTGACTTTTCAAGACTGGCTGGTGGCTGAGCTGGACGTCCAGAGGAGCACAGACACACTATCCGACGCCGAGAGACAGGAGTACCAGCAGTGGGTGTGTTACCAGCAGTACCTCCCAGCCCCTCTGGCTGCGGGGGGCTGTGCTGGAGACCTGGAGAGAGCATGTGTGGCCATCATGAACGCAATAGTGGACCACAGCGTAAGATCAATAGGGCCAGACGGCCATTCTGAAGGATTGGAGCCGAGCAAATTTTCTGGCACATGTTACACGGATATCCTTACTAGACTCcagCCTGTGATCCTAACGAGGCGGCGTCTCTGGACGGTTCTGCAGGAAATGGTGTATGACATGGAGCTGATGCGCTCAAAAAGACTGGCTTTGGGGGTCATGCGCGATGAGGACCACTTCCTGTTCCGCGTGATTTCTGAGAGGCTGGCCACGATTCCCGACAGAGAGAGCCTGAGCGGTCAGCTGGCCCAACAGCAGGAGCTCTTCATCCTCACCAGGATTAttacctccctccctcccgctGTGCTTGTCCGAGCTCGTCACAAGGGCCGGATGGCTACCCTGAACTGTGAGCCGTTCTTTGAGTTTGTGAACGGGCAGCAGGGAAACAGCTGTGCCAGAGGGTGTGTGCTCCCCTGTGAGCTCACTGCACATTTCTTCCggGGTGTACTGAGTGCCAGCCTCGACTGTGCCCACCCTCGTGCCGCTGTGAGTGAGGTGCTCTCCGACTGCCTGTTGCACTGTCCTCTTGCCATCACGTCGGCTGCGTTCTGGTGGCCCAGGCTGCAGGCTGTGCTGTGGGCCCAGTGGGGGAGGCTGTGTGAGGAGCCCCTGCCAGAGGAGCTGCAAAGTATCGCAGACTGCTACTCATGGGCCAGCAGTGCGCTGTGTGAGGCAGCAGCTCCTCCGCCCTCGGACTCGCCCCTGGTCCTAGCAGCCTGCCTACACTGGGCCCTGGAGAGGCAGCCAGCAGGCAGGGACGTCAGGGCGGTGCTGGGCGAGATGGAGGAACACGGGGAGCAGGTGctgctttttcttctcttcttctctctggTGGACCTCATCTCGGTCAAGATCCAGCCCAAGGCTGTGGATCCCCTCCGTGCCATGCAGCGCTGTGCAGACATCCTGAAATGCTTCAAAGACTCTGGCCAATGGCTGGCTCTTTTCCATGGACAAAGCACAGACCAAGGCCCATATCAGagtatttacaaaatgataTCTGACACGCACATCAGGTTGATGCCTCTTGCTTTTTACAGTCTTGTCCCCAGCCTGGATCACACGCTGCTCACCTGTGTAGTCAAAGCCCCGGACTTCCTGAGAACCGCCCTGGAGATGTACAGCGGCCTGGCCAGGCTGTTCCTGGACGGCACGGCCAGCACTCCGACTCAAGCAAAGCACACGCCTGAGCAGGTGAAGGGCCGAGGAGTGTCTAGTGTGACCAGTCACAAGGGAGAGGCAGCTCAGAAAGTTGATCCTCTACAGATTCTGCCTCGAGCTCAGCAGTTTGTTCTCCAGGCTATTTCGCTGAGTCCACAGAGCTGCTTTTTGTACGGGAGACAGCTGGAGGATGTATGTAGAGACCTGGACCCTGAGGTGACCGCTGCCCTGTCTCACCGTCTCCAGCCCAACTGTGACGACTCCCTGTATGAAGTGCCGGACTTCCTGTAAATTATAGAAACTTttgatgaatgtatttattccgTTGAGTTAattgttataaatataataaacagcacatttgttttggagAAGGGGGTTAATTTACAGAGTAATGGATTTCTGAAAACCGACAGAAATCACTGCCAGATCTGCAAACGTTTTCCTGGTTTATGGCTGACCTGAAATCTTTCTCCAATCCCTATCCCTAAAGTCTGTTTTAAGCCTCAGCGACAAAGTatagaaattaacattttccttaaatctctttattaaaaacaatatgaaatgttCAATAGCATGGACTTGGCAAGAATGCTTACTTCAGTTTGAAGACCGCAAACACAGAAAGGCGTACAAATTCTCTGTGAAGAACTGATATCCAAAACGAGCACAGATAGTGTGGCTCAGGAGATCGGGCAGGGAAATCTATTGTCCACAGCATAACTGTCGCTTGTAAACTGACAATCCGTGGTTTTCTTCAACACCattgttcaaatatttaaatgtaactttcctgtttaaaataaaaacacacttcctttgactaaaacaaaatgcctgAGAAAACAAGTTTAATCTTTCCAAGTTTTTAATCTTACTCCTTTTTTCAAACTGTTTCTACAATGGCTTCTCCAGGTGCTTCAATGCATCATTTTGGCAGAATTCCTTGCCGATCACAAAACATGTAGAAGTGAGTTGAACTgctcttcagaaaataaatctagaGCCTAAAGCCTTTTTTTGGACTAAATCCAACACTGGCAAATGATAGGTTGAGATGGCATGGTGTTATTGGAAGAGGAATAGTCTGTCATTGTGTCCATTTTACAATCCACGATGCATAAAAGGCGCTCCATTTTAGAAACAGAACTCTCAACATTGCTAGCAATACTGGGTCTAACTCCTGTTcattatattttgaagaataaacacatgagaatatacaaaataaaaatacataaactatttACATACATCTCCGTTCGATCGATATAAAATTAGATGCCTTCATTGCACATGCACAACAATTTTGTTTACAAGTTCCAAGTGAAAGTGTTTAGCACGTAGTCACCTCTGTCAGCAcacatttgtttcccttttgCCATTTTCAGTTCATTGGATCTGAATGCTTCATGCTCCACTCGACACAAAAGGGAATTTCTTCAGCCGGTAAATTGGCATGATCCATTTTTCAGGGAGGTTCTGAATGGAGGAAAAATCATTCCTTTTTGCTCATCAACAGCTAACGAATACCATATTCTACCTACTCCAACAGTGCAGATACTCAATCAACAGACTCCAGCATGGGGGGGTGTAGTGCTCTGACTTACAACAAGACTACAGTTTAAGAACAAACATGCgagtgtgtgattttgtttttgattgtattcaattaatt

Function

GO: NA

KEGG:

id description
K10888 FANCA; fanconi anemia group A protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80578 lncRNA downstream 43902 25640570 ~ 25643373 (-) True G64412
TU80490 lncRNA downstream 221925 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 223159 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 225633 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 423040 25261926 ~ 25264235 (-) True G64274
TU80665 lncRNA upstream 180250 25895152 ~ 25895866 (-) False AMCG00020614
TU80672 lncRNA upstream 216797 25931699 ~ 25932142 (-) True G64477
TU80685 lncRNA upstream 219999 25934901 ~ 25935451 (-) False AMCG00020613
TU80719 lncRNA upstream 270546 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA upstream 272916 25987818 ~ 25989689 (-) True G64510
AMCG00020602 mRNA downstream 6119 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020601 mRNA downstream 92007 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020595 mRNA downstream 112665 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020597 mRNA downstream 134306 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020594 mRNA downstream 207513 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020605 mRNA upstream 14077 25728979 ~ 25737475 (-) True AMCG00020605
AMCG00020612 mRNA upstream 146853 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020614 mRNA upstream 171148 25886050 ~ 25905598 (-) True AMCG00020614
AMCG00020615 mRNA upstream 195660 25910562 ~ 25917773 (-) True AMCG00020615
AMCG00020613 mRNA upstream 219999 25934901 ~ 25948343 (-) True AMCG00020613
TU80433 other downstream 356705 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 384294 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 410858 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 444764 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 476212 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 183526 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 183526 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1531112 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2511633 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2610405 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile