RNA id: TU80595


Basic Information

Item Value
RNA id TU80595
length 296
lncRNA type sense_over
GC content 0.53
exon number 3
gene id AMCG00020604
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25687275 ~ 25715457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagcagGAAGCGGGAAGGACAGAAAGCTACGCGGAAGTTGTCTGCTTTAGGatcaacatgaaaacaaacccaTGATTTTACTGCGGGTGATTACAGATGTGTGACCATGTCAGCTGAAGCCACTGCGTCCGGAGCGCCGTCACTCTCGTCGCACAAGCCGAGGCCAACGCTGTCCGCTATACTGGCGGCTCGTGTGGGAAAGAAGAGGCCGAGGTATGAAAATGTACaagagctgcaggaggccaCTGTCCAGCTGTTAAACCATCACCAGAATCTCAGAGACCTGCTTGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80578 lncRNA downstream 70762 25640570 ~ 25643373 (-) True G64412
TU80490 lncRNA downstream 248785 25464877 ~ 25465350 (-) True G64342
TU80489 lncRNA downstream 250019 25463540 ~ 25464116 (-) True G64341
TU80488 lncRNA downstream 252493 25461427 ~ 25461642 (-) True G64340
TU80404 lncRNA downstream 449900 25261926 ~ 25264235 (-) True G64274
TU80665 lncRNA upstream 179695 25895152 ~ 25895866 (-) False AMCG00020614
TU80672 lncRNA upstream 216242 25931699 ~ 25932142 (-) True G64477
TU80685 lncRNA upstream 219444 25934901 ~ 25935451 (-) False AMCG00020613
TU80719 lncRNA upstream 269991 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA upstream 272361 25987818 ~ 25989689 (-) True G64510
AMCG00020602 mRNA downstream 32979 25643747 ~ 25681156 (-) True AMCG00020602
AMCG00020601 mRNA downstream 118867 25590014 ~ 25595268 (-) True AMCG00020601
AMCG00020595 mRNA downstream 139525 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020597 mRNA downstream 161166 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020594 mRNA downstream 234373 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020605 mRNA upstream 13522 25728979 ~ 25737475 (-) True AMCG00020605
AMCG00020612 mRNA upstream 146298 25861755 ~ 25867205 (-) True AMCG00020612
AMCG00020614 mRNA upstream 170593 25886050 ~ 25905598 (-) True AMCG00020614
AMCG00020615 mRNA upstream 195105 25910562 ~ 25917773 (-) True AMCG00020615
AMCG00020613 mRNA upstream 219444 25934901 ~ 25948343 (-) True AMCG00020613
TU80433 other downstream 383565 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 411154 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 437718 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 471624 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 503072 25209059 ~ 25211063 (-) True G64260
TU80656 other upstream 182971 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 182971 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1530557 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2511078 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2609850 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile