RNA id: AMCG00020610


Basic Information

Item Value
RNA id AMCG00020610
length 2531
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00020610
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25972533 ~ 25989687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTGTTAGTTTCgggggctttttttttgtactgtaacCTGATTGACGAAAATCACCAACGCCCAAAGcagcaaaaaagaaaggatATGCCCTCTAGAGACGCATGAAGATCCGCTTTTAGTGATCATTCAAAAAAACGACGTCCCAGCCGGCGCATCCTAGAGCAGCTCCGCGCACCGCAACACGCCTGTCCTCCCGCTGCTGCCCGGCCGAACTGTAGCTCCGTCTTGCAGCCTGTGCACCGATTTTGTCCAGGATTTGTGACTTTTTCCCTTTGCCTCGATTTCTTGTTTCTTCCTTGGCTATTTAGTCTCTCCCTAAACCTCTAATAAAATGGCAACAAAAATCGACAAAGAAGCTTGCAGAGAGGCTTATAACCTCGTTAGAGACGACAACACTGAAATTAACTGGGCTTCTTTCGTATACGATGGCTCTACAATCATCCCAGGAGGGCAGGGGACAGAATACAGTGAATTTAAAAGTCAATGCACAGATGACGTGCGATTGTTTGGATTTGTACGGATCACAACAGGGGACGCCATGAGCAAGAGAGCCAAATTCACCCTGATCACCTGGATTGGTGAGAACGTGAGTGGGCTACAGAGGGCTAAGATCAGCACAGACAAGACACTGGTGAAGGACATTGTACAGAACTTTGCCAAGGAATTCATGATTAGCGACCCCAGGGAGTTGGAAGAAGATTATATCAGGAATGAGCTGAAGAAAGCTGGAGGTGCCAACTATGACGCCCAGACGGAGTAGGGAAGAACCCAGAGGGAGACCATCAGCCTGCCGCTGCTGCTTGGACATGGGGTCTGAAGAGCCCAGTGAGATGTAAACCAGTGCAAAGATCcacctcactctctctcctgctcttgtTTGGCTACATCTGCTGTATATCTGTCACCACTTTCCAACATCGCTCTTATCCAGTATACTGAACTCACCACCAATCCCCTCTGCAATTGGTctcgttttattttttattttacttgggTAATATGGAGCCTTACCATATTGAAATACACAGCCCTGACATTGACGTAAGCTGTACCTGAAACAACACCAAGCCCCAAATAGAGCAGAGCCAAAGGTATCTGagccacacacagacagtgctCTGGGGAAAACAATGTGGACTATTATGTGATTTTGTTTGGCAGGGGCTGTTTCAATATGGCAAGGCTCTGTCTGACTGCACAGTCTGAACCTGTCATCTGAGGTTCTCTTTAGTTTAGCGGTAATAAACCATGATTTAGAGTGTTTGTCAGTGCCTGTTTCAGGTCTGCACGACTGGCACTTGTGTGTGAACTTAAAAGCCTCAAAAGGTATTAGTccccttccttttttttttttttttttcttcaccctCCCACCTTTATCTTCAGACTCTGGAAAGTACAGTGGGCTGTCGTAGCTGCTTGTGAAGGGGCCCCACTTTCTCTAAATTTGAACAAACTGGAACTTCTAGTAAACTGCACTCCTTGAAAGCATCACCCTGCCTGATTGATTCTTTGTCTCATTTACAAACGGGTGCCAAAGTGAACTGGAAATCTTTAGCGATGGTTATACTCAAAAACAATAGAAACTACCTTAAACTTGAACCTTTTTGTTTAAGTCAATAATACAGACCTTTCCAGAGTTTAAAAGGTGgatgggcaaaaaaaaaaaaaaagattggttTTGAATTTATTGTGCTTTTGATCATAGTTAGTTCCTTTGTGATACGTTGCTTAATGCAGAAGAGCGTTCTTCAGTCTTTGATTAGATCAGTTTTGGTTAGATCCCTGACTGGAGAATGCTGCTCTACTTTAAGGGACACAATCCTGTTGGTCTCTGAGCTTGTCCAGAGAGTTCCCTCTGTCTGTGAAGAGTGTTAAAGTGGCATATAACTTCCTTGCATTTGCTCCTCCGGGGGCTGTTTCTAAACCAGAGACGAGCCCTTCCCCTCCCCACACCTAATTGCAGATGTTGAATGTGcccttttatgttttatctgCCTTAAAATGTAGCCTCCTGTCTGCAGTCCCATGAGGAGGAGGATGTATGTGGAAATGTATCCTGGAGAGGCCTCTGGACATGcgagatttaatttgatttgtccTTGCAGTGGTATTGGATCGATTGGCTTTCTAATTTTCTAAAAAGTTATCTTGATTACAAACAACGGCCTTCTTTTTCTTGTTAATATTTATCTATATCAATCTATATACGTCTGTATAGATggatataaatgtgtgtatggtGTACACAACAGGTagctgtaaacaaacaaacaaaactgtggatCAAAAACTCAGTACAAGTTCAGTggcacaatttagttttttcattttgaccaaaatgaaaggttttgtggtgtgtgaaaatattttgtttttttctatgaGAGTTGgctgggtttatttttttgaaaaattgggaaaaggaaaaaaaactgtggaaattgtgtatgtattgtgtggAGTTTTGGAAGAGCATCATTATAAGAGATCAACCATTTCAGAataaatttcctttttttcaaaaA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80673 lncRNA upstream 32420 25934905 ~ 25940113 (+) True G64478
TU80641 lncRNA upstream 77008 25894150 ~ 25895525 (+) True G64457
TU80613 lncRNA upstream 152751 25819391 ~ 25819782 (+) True G64436
TU80576 lncRNA upstream 193551 25776407 ~ 25778982 (+) True AMCG00020603
TU80568 lncRNA upstream 244199 25721933 ~ 25728334 (+) True G64406
TU80711 lncRNA downstream 104976 26094663 ~ 26096921 (+) False AMCG00020621
TU80767 lncRNA downstream 205526 26195213 ~ 26197405 (+) True G64555
TU80768 lncRNA downstream 211377 26201064 ~ 26202040 (+) True G64556
TU80769 lncRNA downstream 217897 26207584 ~ 26207838 (+) True G64557
TU80770 lncRNA downstream 223193 26212880 ~ 26213093 (+) True G64558
AMCG00020611 mRNA upstream 40391 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020616 mRNA upstream 87454 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020607 mRNA upstream 110801 25855088 ~ 25861732 (+) True AMCG00020607
AMCG00020606 mRNA upstream 117969 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020608 mRNA upstream 160858 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020617 mRNA downstream 27204 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020621 mRNA downstream 65600 26055287 ~ 26096957 (+) True AMCG00020621
AMCG00020624 mRNA downstream 230943 26220630 ~ 26230564 (+) True AMCG00020624
AMCG00020626 mRNA downstream 438239 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020629 mRNA downstream 452688 26442375 ~ 26471185 (+) True AMCG00020629
TU80525 other upstream 419213 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 887779 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 895843 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1490419 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1916941 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1426309 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 2883943 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3018976 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3474877 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3536028 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile