RNA id: TU80711


Basic Information

Item Value
RNA id TU80711
length 1697
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00020621
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26055287 ~ 26096957 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAAGCCGAAGAGGAGCTATACTCCTCTTTCAACCAGCTGAGAAAGCGCCAGGCTGAGCTGTCCAATGAGCTCTTCCTGTACGACACCCACCAGAACCTGCAGAAAAGCCCGTACAGCCGCGATGACCTGATGAAGGAGTTCAGCACCACCGAGAGTCAACTGCACAAAATCCAGGACACCTGCAAGCAAAAgatgaaagagaaaaagatcAACAACAGCAAGTTTTACTCATGAGCTCtctccacaaacaaacaatattttgagCACCAAACTCTCTTTCTCTGAGATTACAAGCGTCTTTTGAAGACTTTTGCGCTGGACTGATGTGCACACAGACAACGATGTCCAACTGAGACAGACAGCTGCTGCTCAATGGAATGGACATTTGACAAGCAGATCTTGCTTGCGCTGCATGATGACATCACACAGTGGAGTGGACATATCAGCTGGTTTTAGGCTTccattcttttcatttttttattttttcatttggttttgcttgtgtttgtatttatataatttagtgAGAAAGTGAAGTTTGGCAGCAATGAGGAGGAAACAGAAAGATTTGAATAATCTGCTTCAAAGGCCCTGGTGCTTTGCCATTGAGGACAGTTTGTTTCTTGATGTTGATTGAATTGCCCTGCAGTTTTACAGTTGGAAGTAAGTATACTTGCTCCCTGCCACTTCTTAGTTTTTAGGTTTGGTTGTTTGAATAAAGTGCTGTATTGAAACCCACTCACTGTCAAAGAAATGTCACAATTTCCCTTCATTATAGGTTCTTACTttggaattgttttttgtttaatttaaatccattcGGAGGGACAGATTGTGGTGCATAATGAACTAAACCTCACATACTCCACACTGCACAATAACACAAACTCAATAAGGTATAGCCTAAACGAAAACTATTACACAAACTTACTTTAGCCACACACTTTTTCAAGAATCCCACACAGGACAgtgataatacaaaataaatgtgtatgatCTGCCATTCCCCAGGATGAACATAACACAGATCCCAAACATGGATCTCTCTTCCACCATCCTGTATGAAATTTTTGAATATAGTAGAGGGTAAACTTGATGGCACTGAAAGAAGAACCATTGTCCCCCTAATTACTAAATGTCGTCTTTCTCAAATAGAAAGTTAAATATAAGTTTTTAATGCAGAAGGTGTTATTCATTCTAGAAGGTGATTCATTTAAGTTACCTTTTGTATAGAAATAATTAAGTGGAaccaattatgttttttccttttgaatcaCCCGTGTGACACATTGATAGCGTAAGTTTTCCAGGGTGACCACACCAGGACTTACGTGGGCAAATGTCATCATCCAGCATCAAAACATTTTGTAgttgtaatattttgttaaaagaaTCCTAATATAGACAGAAACTAATATTGAAACGGTCATTGTGCGGTGTACTGACATAATATGTAATCGGTGACGAGGTTTGCTTTGCTAACTCATCCATAAATCCTGGACACTTTGAAAGAAAACACGTTTTAAAAGTTGAGCAAAAACTaagatgaatgaataaataaatatttcatgtaTTATGCATTGCAGTAACccagtctttttttgtttcaacatCCAAGGAGATTATACAGTGCGGTTTGTTCATTGTGACTAGCAGGAGCGAATGTTACGTgatgtacattatattatagtagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80673 lncRNA upstream 154550 25934905 ~ 25940113 (+) True G64478
TU80641 lncRNA upstream 199138 25894150 ~ 25895525 (+) True G64457
TU80613 lncRNA upstream 274881 25819391 ~ 25819782 (+) True G64436
TU80576 lncRNA upstream 315681 25776407 ~ 25778982 (+) True AMCG00020603
TU80568 lncRNA upstream 366329 25721933 ~ 25728334 (+) True G64406
TU80767 lncRNA downstream 98292 26195213 ~ 26197405 (+) True G64555
TU80768 lncRNA downstream 104143 26201064 ~ 26202040 (+) True G64556
TU80769 lncRNA downstream 110663 26207584 ~ 26207838 (+) True G64557
TU80770 lncRNA downstream 115959 26212880 ~ 26213093 (+) True G64558
TU80771 lncRNA downstream 116456 26213377 ~ 26213728 (+) True G64559
AMCG00020617 mRNA upstream 65214 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020610 mRNA upstream 104976 25972533 ~ 25989687 (+) True AMCG00020610
AMCG00020611 mRNA upstream 162521 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020616 mRNA upstream 209584 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020607 mRNA upstream 232931 25855088 ~ 25861732 (+) True AMCG00020607
AMCG00020624 mRNA downstream 123709 26220630 ~ 26230564 (+) True AMCG00020624
AMCG00020626 mRNA downstream 331005 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020629 mRNA downstream 345454 26442375 ~ 26471185 (+) True AMCG00020629
AMCG00020630 mRNA downstream 392385 26489306 ~ 26507324 (+) True AMCG00020630
AMCG00020631 mRNA downstream 794696 26891617 ~ 26904288 (+) True AMCG00020631
TU80525 other upstream 541343 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 1009909 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 1017973 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1612549 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 2039071 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1319075 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 2776709 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 2911742 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3367643 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3428794 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile