RNA id: AMCG00020623


Basic Information

Item Value
RNA id AMCG00020623
length 387
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00020623
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26178949 ~ 26179335 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTCAATAGCAGCTCGGGTGGAGGCAGCGAACTCCACAACAATCACCAATACCAGTCGGAGGAGAGCAAACCCTTGCTGGGCGAGATGTCCGCCTTGGCACCGGCGGAGGGGAATAATAAAATGGGGGCCGCACCGTGTCGGAGAGTCCTGCTGCACTGCAATGGGATGAGGTACAAACTGCTGCAGGAGGGGGACATCCAAGTGTGTGTCATTAAACACCCCAGGACCTTTCTGAGCAAGCTGCTCACTTCCAAGTACTTGAGAAGATGGGAGCCCCATCACCTGACGCTCACGGATAACAGTCTGGCTTCGGCGACAGTAAGTACCGCATTTTCTCCtcctctgcctgcctgcctgccattGATCCGAGCGGTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80719 lncRNA downstream 189260 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA downstream 189260 25987818 ~ 25989689 (-) True G64510
TU80685 lncRNA downstream 243498 25934901 ~ 25935451 (-) False AMCG00020613
TU80672 lncRNA downstream 246807 25931699 ~ 25932142 (-) True G64477
TU80665 lncRNA downstream 283083 25895152 ~ 25895866 (-) False AMCG00020614
TU80774 lncRNA upstream 12226 26191561 ~ 26192678 (-) True G64562
TU80822 lncRNA upstream 247815 26427150 ~ 26428274 (-) True G64608
TU80843 lncRNA upstream 392167 26571502 ~ 26571716 (-) True G64625
TU80845 lncRNA upstream 456253 26635588 ~ 26635788 (-) True G64627
TU80847 lncRNA upstream 550520 26729855 ~ 26730111 (-) True G64629
AMCG00020622 mRNA downstream 49930 26109019 ~ 26129019 (-) True AMCG00020622
AMCG00020619 mRNA downstream 125221 26021742 ~ 26053728 (-) True AMCG00020619
AMCG00020618 mRNA downstream 207149 25966140 ~ 25971800 (-) True AMCG00020618
AMCG00020620 mRNA downstream 213642 25960378 ~ 25965307 (-) True AMCG00020620
AMCG00020613 mRNA downstream 230606 25934901 ~ 25948343 (-) True AMCG00020613
AMCG00020625 mRNA upstream 20536 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020628 mRNA upstream 193451 26372786 ~ 26393051 (-) True AMCG00020628
AMCG00020627 mRNA upstream 236640 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020635 mRNA upstream 923066 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020639 mRNA upstream 1068564 27247899 ~ 27248945 (-) False AMCG00020639
TU80656 other downstream 260319 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 273338 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 848379 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 875968 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 902532 25274541 ~ 25276417 (-) False AMCG00020589
TU80934 other upstream 1066679 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2047200 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2145972 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2609245 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 3201980 29381315 ~ 29405636 (-) True G65000

Expression Profile