RNA id: AMCG00020624


Basic Information

Item Value
RNA id AMCG00020624
length 2115
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00020624
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26220630 ~ 26230564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCAAGCACGCTACTCGGTGTCAGACCCCAACAGCCTGGGGGTCGTGCCTTACCTGAGCGAGCAGTCGTACTACAGGACAGCCAGCACGTATGGCAACATGCCCACCCCGATGAGTGTCTACTCGGGCCATGAGCAGAGGCGCTTCAAGAAGAAGGATACTTCCCGGGACAAGGACGAGCGCAGCACCCAGCTGAAGGAGCCCAGCAAAGGCCAAGGCCCGGTCTCCAAAGCCGAGGCGCCCTCCAAAGAGCTCCCACTCGAGAAGAAGGTCGTGATTAAAAGCGAGGCCTCGTCCCCAGACATACCTGTCATCACGAAGATGGAGACCATGAGCCCCGACAGCGGGAGTGTGATGCAGGACAGCCCGAGAAGCGTGGCCTCAACCCCGTCAGTGTCCACCGAGAGCTCCATCCCTGACCACCACCCCTCCAGCAACGGCCTGTCGGGGTTCAGTGTGGAGAACATCATGACTCTGAGGACTTCTCCTCAGGGGGACTTGAGCCCGGTGTCCGTCTCCTCCAGCCGGACAGGTATGGTCCCTTCGCTGTCACTCAGTTACCCGCAGGGCCAGCCCTCCATTTATAGCCAGGCTTGCACGCAGGGCATGGATTCTACCGCAGGATACCAGTGCAGCATGCGGGCCATGAGCCTGTACACCGGGGACCGCACTGGACACATGTGCGTCCCCACCACCGTGGAAGAGgccatctcggaccaccacggCGGAGCCACTTCCCCGCTGAACTCCGTCAACCTGGGAGCCAACCCGGAAAGCGTGCTGGTTTCCAGTCACCATCCACAGAGCGCAGGCTCCGGCCAGGCAGCATCTTGGTATCTCAATCACGGGGGGGATCTAAATCACCTTTCAGGACACAGTTTCAGCAACCAGCAGCAGACTTTCCCCAATGTGCGGGATGTGTTCAACTCGCACCGCCTGGGAATCGAGAGCTCAGCCCTCAGCGAGCACCAGGTGAGCGGCAACTCAAGCTGTCAGGTCCCGTATAGATCCACGTCCTCCCTTTATCGACACTCGAGCCCATATGCATATGACTGCACGAAAAGTGGAGCTGCGGCTTGGAGCTGCTTTTTTGTGGGGGGCTTGATCAACTTCAGCGCTACCTTCATGTCAATTGAAAAGGGGGATTTAGCAACCATGAGCCAAATTTACAACAGCCGCATCCAACAGCTTGGCGTCCCGCAGTCGGCTTTAAATCTTTCAAACTCTTCCTTGATATACGTCTATGGAGGGGAGAGGAACATCGATCCGAGACCTTTCAAGAGAAGCAAGCTGGCAGACGGGGTGCCGTTCCCATCTGCTCCTCGTCCCACTCATGGAGCTGACTTGGACGGCACAGCGGGAGGGAAAGCATTGGGTCTCCAGGCAGAGTCAAACGGGACCGGGggcaacactgacacacagcagcaggaaTCGCCGTCTGATGCCGAAGCTGCGGTGGCTTCATCAGATGGCACTAGCCCTGGGAGTCGGGTGGTGCAGTGTACAAAGGCGCACTACCCTGGCACGGCGACCGAGTCGGCTCCTCGAGTGGGCACCTCCGGGGAGACCTGGCACAATGTCCGGCCTTCGTCAGCACTCTGCGCCCCTGTGCGTATTGATCCACTATTTCCCCCAAAGGAAGCGAGCTTTCTATCCGGCGAGGACACTGTGTGTGTTAACGGTACTACCCAAAAGGATGAGGCGAAAAGTACCAAGACAGCTGGAGGGAGAACAGAAGATGGAGCTGCACCCGTTTCAGGTACTGCATCCCTAAATCCAGCCAGACAGCCCGACTCACCGAGCCAAATGGGTACCGAACCAACCAACCCCAAAGGAAGGATGCAAGCTACTCCCAAAAGCGCCGACAGGTCGAAAGGTTTTAGTATAGACAGCATTTTATCCAAAAAAAGTATACAAAGCCCTTCTAAAAGTCACATGTGTATATCAGCAATAGGTTCAGACAGTAGAGGTGGGGCGTTTGACAGCTACTCAGCGTTTAATACTTCATTGATGTTTGGTGCTCAGCAAGTGCCGGGCAGATTATATCAGATCGGGTTTCCCTTCCCTTACCTCCCTTTAACTTGCTCAGAGAAGCTACTTAACTTCCATTAA

Function

GO: NA

KEGG:

id description
K09396 FOXC; forkhead box protein C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80773 lncRNA upstream 3500 26216632 ~ 26217130 (+) True G64561
TU80771 lncRNA upstream 6902 26213377 ~ 26213728 (+) True G64559
TU80770 lncRNA upstream 7537 26212880 ~ 26213093 (+) True G64558
TU80769 lncRNA upstream 12792 26207584 ~ 26207838 (+) True G64557
TU80768 lncRNA upstream 18590 26201064 ~ 26202040 (+) True G64556
TU80814 lncRNA downstream 201110 26431674 ~ 26432153 (+) True G64601
TU80816 lncRNA downstream 203276 26433840 ~ 26435114 (+) True G64603
TU80926 lncRNA downstream 1012556 27243120 ~ 27244109 (+) True G64702
TU81084 lncRNA downstream 2098416 28328980 ~ 28415277 (+) True G64823
TU81090 lncRNA downstream 2108471 28339035 ~ 28342230 (+) True G64829
AMCG00020621 mRNA upstream 123673 26055287 ~ 26096957 (+) True AMCG00020621
AMCG00020617 mRNA upstream 191181 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020610 mRNA upstream 230943 25972533 ~ 25989687 (+) True AMCG00020610
AMCG00020611 mRNA upstream 288488 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020616 mRNA upstream 335551 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020626 mRNA downstream 197362 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020629 mRNA downstream 211811 26442375 ~ 26471185 (+) True AMCG00020629
AMCG00020630 mRNA downstream 258742 26489306 ~ 26507324 (+) True AMCG00020630
AMCG00020631 mRNA downstream 661053 26891617 ~ 26904288 (+) True AMCG00020631
AMCG00020632 mRNA downstream 777303 27007867 ~ 27018076 (+) True AMCG00020632
TU80525 other upstream 667310 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 1135876 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 1143940 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1738516 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 2165038 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1185432 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 2643066 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 2778099 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3234000 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3295151 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile