RNA id: AMCG00020628


Basic Information

Item Value
RNA id AMCG00020628
length 1452
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00020628
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26372786 ~ 26393051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGTTGAAGGTGTTGCAGTTGGTAACCTGATAGACTTCGATGCTGAACCGTGCGAGACTCCGCCTGCTGTGACAGCGCAACAGAACACCATTTACTTTGACATGGACTCCTTCGGGACAGGAGCTGCAGTCCCCGAGGAGAGCCAGGATTCGGTCTTGAATGGCAACGAACACTATCAGACAGACTCCTTTGTCCCTGACCCTGGAGAGGACACGATGGAGGAAGCTGTTGTGAGCACTGAGGGCCAACCGGATGATGGGGCTTATGTTACAGAAGCCACTGTGGATGACGGCTACGAGCCCGAGAGCGTTCACACCTCGGAGGTGCCGGTTGAGAGCAGGACCCACGCAGAGGACCTGGGAAACGAGAGTGAGGCCACGGAGTCGGCAGACAGTGAACATGAGGCTACAGACTCCCCCTCCCACGGGGGCTGGAGTACTTCGCGCCGCTCCTCCTCCAATGAGTCATTTTCCTCCAATCAGAGTGCTGAGTCTGTGGAGGACGAGGAGTCGGCTGAGCGCAGGGAGTTCATGAAGGCCTATGTGGAGAAGATGTTTCATGGACGGGATGAGTTTGAACAGGAGGAGAAGGCTCGGTTTGGAGAGCTATGCAGTGGAGAGAATGGCAAAGGCAGGGAGTGGTTCGCCAAATACGTCAGCGCTCAGCGCTGTAATTCGAAATGCGTCTCAGAGCAGACCTTCTACAGGCTGGTGCAGTCCTTTGCTGTTGTTCTGTTTGAgtgCTACCAGATGGATGACTACGGTCCTGCCAAAAACCTCATGACTATGTGTTTCACTTATTACCATTTGGGTAAGATGCAGCTCTCCCCCACCGAGCTCCTGGAGAAGCCCATGGCTGGTGTGAACTCCTACATACAGACGGCCAACACCTGGCTCGCCGGCAAGAAGGACATCGCCGAGCGGCTCCTCAAGAACACCTCTGCCAAGACCGAGAACGTGAAGGGCTTCTTCGGAGGGCTGGAGAGCAAGCTGCGTGGACCAGCCCCCAAAAAGAATGAtgaTGTGGAGAATAAAACTGAAGGGAAGCCCAAAAAAACTGTGGTGATTGAGTCTCCTGAagagaagaaaggagaaaagatCTATCTTTACACCCATTTAAAGCAGCAACCCATCTGGCACACCCTGCGGTTCTGGAACGCAGCGTTTTTTGACGCAGTTCACTGTGAGCGGAAGAAGAGGTCACCCACTACACGGAAGACTGCtgaggaggagaaagaagagagGGAAAAGTGGTGTCACATGACCCAGGAAGAGAAGGACGACAGCCTACGGTTCAATGAGAACATCACGTTTGGGCAGCTGGGaaCATTCACCCACAACATGTTGGCCTTTGGACTTAGCAAGAAGCTCTGCAATGATTTCCTCAAGAAGCAGGCTGTTATCGGCAATCTGAATGAAGaATTGCAGAAGATCCAGCTGTCACAGTAG

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80774 lncRNA downstream 180108 26191561 ~ 26192678 (-) True G64562
TU80719 lncRNA downstream 383097 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA downstream 383097 25987818 ~ 25989689 (-) True G64510
TU80685 lncRNA downstream 437335 25934901 ~ 25935451 (-) False AMCG00020613
TU80672 lncRNA downstream 440644 25931699 ~ 25932142 (-) True G64477
TU80822 lncRNA upstream 34099 26427150 ~ 26428274 (-) True G64608
TU80843 lncRNA upstream 178451 26571502 ~ 26571716 (-) True G64625
TU80845 lncRNA upstream 242537 26635588 ~ 26635788 (-) True G64627
TU80847 lncRNA upstream 336804 26729855 ~ 26730111 (-) True G64629
TU80848 lncRNA upstream 338384 26731435 ~ 26732288 (-) True G64630
AMCG00020625 mRNA downstream 155973 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020623 mRNA downstream 193451 26178949 ~ 26179335 (-) True AMCG00020623
AMCG00020622 mRNA downstream 243767 26109019 ~ 26129019 (-) True AMCG00020622
AMCG00020619 mRNA downstream 319058 26021742 ~ 26053728 (-) True AMCG00020619
AMCG00020618 mRNA downstream 400986 25966140 ~ 25971800 (-) True AMCG00020618
AMCG00020627 mRNA upstream 22924 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020635 mRNA upstream 709350 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020639 mRNA upstream 854848 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020647 mRNA upstream 866801 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020644 mRNA upstream 888564 27281615 ~ 27286072 (-) True AMCG00020644
TU80656 other downstream 454156 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 467175 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 1042216 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 1069805 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 1096369 25274541 ~ 25276417 (-) False AMCG00020589
TU80934 other upstream 852963 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 1833484 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 1932256 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2395529 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 2988264 29381315 ~ 29405636 (-) True G65000

Expression Profile