RNA id: AMCG00020629


Basic Information

Item Value
RNA id AMCG00020629
length 2975
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00020629
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26442375 ~ 26471185 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgatAGTTTAggttcagttttgttaatttcttttaaaatggcaCTGGAATGTATTAGAAAGAAGTACCTTTAACCATTATAGTGCCATTTaggtatgtatttttataaaatcaaaagtGATGTTTACCTTGCAAAACAAATCTTATTTTGTAAAGGTATAATTTGCATGGAATTGTGCGTTGCAGTCACATTGATCACAATAGGAAACGGCCCAGAATGGTAGTGCTGTCAGTGCGGCGGGGGACAGCATGGCTGCGGCGCACACGGGCGGCCGCGTCCTGCTGGGGCTGAGAGACGCTGCTTCGGACGGCGAGGGCCTGGCGTGTCTGACCAGCACAGTGGGAGGGTCGCCGAGTTGCTGCCCGTCTCTGTCTCTACGGCGCCCCTGCTGCTGGCGCTGCGGCGCTGCTCTGGCCCATGTGGTTCAGGTGTACTGCCCCCTGGAGGCCTCTCCCTATCACCGCACCCTGAACGTGTTCTCCTGCCCCAGCGCAGCCTGCTCCGGGAAATCTGACGGctgGAAGGTCTTGCGCTCCCAGTGtttggaaactgaaaataaaccatCTCAGGAGCATGATGCAAAGAAGGAGGTTCTCATGGCAGCCAAAGACTGGTGTGATGGAGCTGATGACTGGGGAATGGATGAGGACCAGGGGAGCACGGGCCTGGCGTCCGCTCCGCCCTGTGACGCTGCACTGACGCCCTCCCAGAGCGTGTCTGTGGAGTCAGATTTTAACAACAGGCTCCAGGGCCTCAGCCTCGGGGACGGCACACCGGGCCCTGTAGAAACCACTACAGAAGGCCTGGTTCTGCCTGGTCCTGTGCCTGCCTTCCAGTCCTACTACATCAGtgtggtggaggagggggagctCTGCCCTGAGGAAGACATGGACCATGCTCAGAGACTGCTCAAGGAGTACCAGAAGAGAGAGGGCATTGTTGTAGAGGACTTAGTAAGCTGTGATGCTGGACAAGAGGTGGAAAAATACGAGAAAGCTAAGGTCAGACATGGAGACGAGGTCTTCCTGAAATTCATGAAGAAAATCTCCCTGTGTCCCGAGCAGATATTAAGGTACTGTTGGAATGGGGAACCCCTGTTCATCACAGCGCCTCCCTCCAATGTGAAGCAGATGGTGCCCCCCTGCAGCTGCTGTGGCAGCCCCCGAACGTTTGAGATGCAGCTCATGCCAGCTTTAGTCAGTATGCTCAAGAGTGCAAACTCGGATGATTTGACAGTGGAGTTTGGGACAGTATTAATTTACACTTGCAAGAACAGCTGCTGGCCTTCTGGCACTCAGGCTCCATTGGAGGAGTTTTCATTTGTCCAGCCAGACCCCGATCAGAAATTCttcaaataaagtgttacaatcaaaataaaccatacaaaacataaGTGTTTGAACaattttattcaatttcattCAAACTATACATGATTGTCATGTGGCAGCTGCATAAAATCTGGTTACATGCTTCTCAAAGATCACAATTCTAGACCTGTCTGTTGCAGTTTTATTCATGCATCTCTgttctaaaataacatttaagaaTTGCAATTCTCAGACTAGAACCCCACACTACTCTCAATCTGGGCTGGAAAGAAGCGGCTAAACTGCAGCTATAGCCTGGATTCCTAAACGTCTCAATAAAACAGTGGTGTCagtttttcttacaaataaaacaatatggtaTTAGATGCCTGGACGTCCGTAGCCGAGTTAAAAAGGCCAAACTGGAGAGAGAACCCCAACTGATCGCCTGCTTGCACGTCACTCCCCCCATCCTCTGATGATTGGCTAATTCTCCAGAAAGTGGTCTGTGATTGGTGGGCTTCCAGACAGCAGCCTGAATGATGTCGGAACAGGACCTTGCGGAGATGGTGCAGATTGCTGTGGAGGACTTGAACCAAGACCACCCAGTGGTTTTGGAAAATCATGAGGAGCCTGATGAGAGTGACAAACCAGAGAGGAAACGACAGAGACTGGAGATTACCTGTCAGGAAACCTCTCTTAAGACCCTACTCTACTCCATAAACCAGACCATCTGCCAGCGCTTAGACAATATTGAGGCGAAGCTGCAAGCCCTGGAGGCCACTTACAAGTCCCTGGAGGAGAAGCTGGATGTGGTGATGAACAAGAACCAGGGGCCGATTCAGGTTCCCATGGTGGCTGGGTCTCCTCTGGGCGCCACGCAAACCTGGAACAAAGTGCGCTGCGTGGTCCCACAGACTAACGTCATTGTGAGCGGTGACAGGCCCAAGGCTGTGGGACAGGAGGACACTGtccccagaggaacagagtcaTTGGAAAACCTACTCAGCAACACGGTCAGTGGCCGGAGACAGAACACGATCTTGGTGAAGGTTCCTGCTCCGGATGACAGCCACAATGAGGATGCGGAGAGCGGCTCGGAGGCCAGCGACTCAGTGTCCAACAGCGGCCAGGCAGGGGGTCAGGCTGCAGGCAACAACGTCACCCTCATCACGCTCAACTCCGAAGACAGTGAAAGAACTGTGTATGCTCTGCTGGAATCTGCTGCCAGGTGACAGTCTACCTGAGGAGAGGAGGCGCAGAGGACTCAGTGGAGTTAGCTATAGGCCTGTTTTTATAGGCATTGCATCCCTGTAGCCTGATGTTCCCCATACTGCTCAGTGCAGCGGCGATGCTGTGCTGAACCCTCAGGTTGTTCATTGAGATGCTTTTGTACTGTAATCTGGAGTCTCTCTGTTATATCTGGAACCCAGGTGCTGTTCTCCAGATAGGATGACATGTGTATGAAGTTAAAGCATTGTTTGTACTTTTCTAAGCTGTAGTAGTAAAATCAGGtctgaaatgttatattaacTAAATTTGTAGCTCTGAAGCCCAAAGAGGATTTTTTCTTTGTGGGTGCGGGTTGGGGTGTACACttcatgatatattttttaagttcttttttgtgtgtatgttcaaaataaaacttacttttgtttta

Function

GO: NA

KEGG:

id description
K14801 TSR4; pre-rRNA-processing protein TSR4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80816 lncRNA upstream 7261 26433840 ~ 26435114 (+) True G64603
TU80814 lncRNA upstream 10222 26431674 ~ 26432153 (+) True G64601
TU80773 lncRNA upstream 225245 26216632 ~ 26217130 (+) True G64561
TU80771 lncRNA upstream 228647 26213377 ~ 26213728 (+) True G64559
TU80770 lncRNA upstream 229282 26212880 ~ 26213093 (+) True G64558
TU80926 lncRNA downstream 771935 27243120 ~ 27244109 (+) True G64702
TU81084 lncRNA downstream 1857795 28328980 ~ 28415277 (+) True G64823
TU81090 lncRNA downstream 1867850 28339035 ~ 28342230 (+) True G64829
TU81167 lncRNA downstream 2466703 28937888 ~ 28938164 (+) True G64894
TU81193 lncRNA downstream 2578308 29049493 ~ 29049815 (+) True G64916
AMCG00020626 mRNA upstream 13612 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020624 mRNA upstream 211811 26220630 ~ 26230564 (+) True AMCG00020624
AMCG00020621 mRNA upstream 345418 26055287 ~ 26096957 (+) True AMCG00020621
AMCG00020617 mRNA upstream 412926 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020610 mRNA upstream 452688 25972533 ~ 25989687 (+) True AMCG00020610
AMCG00020630 mRNA downstream 18121 26489306 ~ 26507324 (+) True AMCG00020630
AMCG00020631 mRNA downstream 420432 26891617 ~ 26904288 (+) True AMCG00020631
AMCG00020632 mRNA downstream 536682 27007867 ~ 27018076 (+) True AMCG00020632
AMCG00020634 mRNA downstream 650067 27121252 ~ 27131382 (+) True AMCG00020634
AMCG00020633 mRNA downstream 695587 27166772 ~ 27169656 (+) True AMCG00020633
TU80525 other upstream 889055 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 1357621 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 1365685 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1960261 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 2386783 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 944811 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 2402445 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 2537478 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 2993379 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3054530 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile