RNA id: AMCG00020631


Basic Information

Item Value
RNA id AMCG00020631
length 4266
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00020631
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26891617 ~ 26904288 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGGAGACACTCAGCATGTTTATGCCATTAAAGAATCTGAAACTAACTCCAAACAGCAGGACGAGGAGACTTTGTTTGATCAGTTCAGTGACAAAGATTCAGGCGACTTCAAAAACAGCCTGCCCAAGAACTCTAATACCAACCCACAATCCAAGGCTGTCAATGGGGCCGAGTACTGTTTGAAGGATAAGGAGTCCTACTCACAGAGAGAGGCTGTGATCAGGCCTCAGCAAGCAGGGAAGATTGATTTCAAGTCCCTCCAGAACAGGCCCAAGTTTTCCAGTGACAGGACATGGCCAAGCAGCAAAGGCAGCCCCCAGTCCCCCAGCGGAAAAAGCAGAGgcagagacaaaaacaaaaaggctggGAAAGGGGAACGCAATCCACAGCAGCTTTACAGGCTGAGCATGACCAACTCCAGGTCTAACCCCACCATTGGGATTGCCTACCCACAACAAAAAGTGACACCGCCCAAAAAGCTTGAAACCAACAGGGGTCCCATAATAGGCAGTTATCGGTTTCATGTGCCCAGCATACCGGAGCGAGAAGCGGAGCTGCAGCAAGAAGATCTCAACTATAGCAGATGTTTCCAGGAGGCTTCCTCAAACCTTACCTCCACGAACTATACCTCACATGCTTCTGGTGCTACAGTGTCAACAAGCCCTGTCAATATGAGCTCTGAGGACAGCCAGCTACCAATGGCAGGCCCACCCCCTCCTTTCTATCACCAGCACTGCCACCTTAAAGAGGGGAAGTCCTTGCAGTCCTCAGATCAGTTGAACTCCAGCCTTCACCATCTCCACCCTGATGTCAGCAGAAACTTTTCTCTTCCCCCGGAAAGGACCAAAGATGACATGTTTAACTTCTTGCACGACACAAAATTCTCAAAGCCAAATTCAGACAGTGGAAAGGGTTGTATGAATAGCTTTGGGGTCGATcatcctccgcctcctccttaTTCAGCACATCAGTTGCTAGCCAATTCGCTAGCTGCCGCCAACCTGGACCAGCTTGATGTACTTCTCACCTGCAAACAGTGCGACCAGAACTTCAATAATCTGTCCTCCTTTCTCGAACACAAACAATACTGTGGACAGCACACAATGACTCAAAGTGATTTTAAAGATACGGCTAAAGTGGAGGAGAGTAGAAAGTTTCAGATGGACCTGACAAAGACTGCTCCATCTATTCCCACATTCCCATTATCAAGATGCCCATCGGATTTACACCTCTCTCTTTTAGGGCTGAACAAAAATGTAAACCAGGAAGAAATTAATTTAGTCCTGGCAGGAGCTGCAGTGGGGGGTGTAAGCGAGAAGAATAAGCAAAAGGCACTGGAGAGCAAAGGGAAACAGAAAGTGTTAACTCCAATGGGGAAGACTAAGAGAGCTGACAAAGCACAAAAAGGCAAAAAGACACCTGCCTTCCTTGCTAAGTCTGTGGAtaacaaagaactttctgagAGTCATGAAAGCCCAGCGTTCGTGAGCAAACTGAGGGACCAATGGAAAGACAATGTAAATGCCGACATTACCGACAGTGACATAGCAGGCAGCCAAAGTATGAAGCCAAGCAAGAGGCCATTGGAACGCAAAACGAGAAAACGCAGCGAGGCCGGCATTAAACCAAAAGACAAGCAGTATAAATGCAAGGCTTGTTTCACCTGGTTCCTCACCATTGGGGAGTTAAATTTTCACAAGCTCTCCCACAACCCTTCACCCCCTCCAACCTGCTACATGTGTGTGCAGCGGAAGTTCAGCTCCCGAGAGCAACTGAGAGATCATTTGAAAGAGAAGCATGCAAAGAACAAGGCAGGGATATGGACTTGTGGGATGTGTCTGAAGGAGATCTCTGATGTTTGGATGTACAATGAGCACCTGAGAGAGCACGCCACTCAATTTGCCAGGAAGGGACAGGCTCAGAAGTCTGTGCTGGGGCTGCCTGGCTGCTTCATGCAGGAAACAGCAGTGAAAAACTTTCTGAGTTCTATCATGCAACGCCGACCAAGCAGATCGGTTAAAAGCGATGGAAGCAAAACCCCTGCTAAAGAAGGGAAGGCTGCAAAAGAGAACTTAGAGCAGGACCCCAAGGCCAAAGATGCAAGTGAGACAGCCGTCAAAAATAAACTTAACTCTGGAGGAGGTGGAAAGCATACCACACaggtcacacagacacaatcgGAGGATATGCCAAAAGTAGAAGCATCCCAAAAGAGTGTCGTCATGCATCCAAATTGCAAAGATCCTTCCAGAGACTGTCACCATTGCGGGAAACAGTTCCCCAAACCCTTTAAACTTCAACGGCACTTAGTGGTCCACAGCTTACAGAAAATATTTCTCTGTCATAAATGCCCCATATTCTATAAGGAATTACAAGAACTCAAAACGCACCTCAAAGATGAGCACAGTGTAATTGAAGAGCCGGAGGTCAAACACACCACACTTTATGCATGCGAGCTGTGCGCGGATGTCATGCACGTTATTAAAAAATCTTTCATTTGCAGCACTTGCAATTACACTTTCTCAAAGAAAGAGCAGTATGACCGCCACATGGAAAAGCATCTAGCAGGTGGAAGCAAGACCTTTAAGTTCAGAGGGGTGATGAGACCTTGCAAAAGTCCAAAAGATGAGGAATTTGAGCTGCAGACCTCTTTCAAAAAGGAATACATGCCGCCAAACAAAAAGCGGAAAATTTCTTCTGATAGCTTGACCGAGAACAGCTCTGACAGTGGCATTGCCAGTATGGCTTCACTGCAGTTTAACTCCCATGGAGAAGTGCATctttcaaaacagacacagcctGTGACCTCCGACTTCTTCACAGAGACTGTGGACAACCCTCACTCCAGCCTAGAGGATGTGAGTGTGAAAAGTGAAGATTTTGCTGAGGATGTTTCAGAGCTTGTGGTTGTGATGGAGCCATCGCCATTTGTCACAGAATCTGAATCACCTTGTCCATCCCCTGCAGGGCCTAAGACTAACACAGTGGACTCTTCTGCTTCTCCTGAGCTTCCTTTGGCAGAAGAGGTGAGCACAGTCTGTGACGGAACTGCCGTGAAGTCAGCAGAGACCTGTGACATCCAAATTGATGATGATTACTGCGACCAACAATCAAAGCAGTGTGACTCAGTATTAGCTGTTAACGATAGAGGGGCAAGGGGAGATGAATTCAGCAGCAGTGATTCACAAACTCAGTCTGAGAGTATCAGCCAAATGAGAGAAGAGCTCCAAAGTCTTGAAGCCTCAAAGGAGGAAATGGACTCATCTGTGCCAACTAAGACTGTATCAGAAACACCTGATCAGAAACACCAGAGTGATGCCAGTAAGAATGAGGACTTCAGAGAAAGGTCAGAATCACAGAACACATCAAAACAGGACAATCTTTCCCAGAGGACTACAGACATTAAGCAGGATGCTGCTGATGTAAGATCTGACCAAACAATAGAGGAAAAGCAGGCTTCTGGTGATGCACAAAAAAACGAATGTGAACAAACAGATTCAAAGGCAGCCAGCAGCAGTGAATTTCAAACTTGTGGTCAAACTTCATCCAGGTCGAGTGAAAACGCCAAACACAGCACCGACTACACCAaagttgttgttgatgatgtgAAGCTTTCCACGGGCTCTCAAGGACTAGCTGAGCCTGTGACAAGCTATTCAAAGCCTAGCACTTTGAATGTGGGCAAGAGTGAAGAGAAAGACTTGCTGTGTCTGAAActtcagaaaaaaaggaaagacttTAAGATATCTCAGAGCTCAAAGGTGTCTTCCTCCACTCGGGAAAATTTTGATTCAGAGATGAGGAAGAAGAAAATTAGAGTCCAGAGTCCTGCCAAAACTGAAAGCACTGGGAGCTATAAGAAAGCAGACATTACTAATGACTACCCAGTGCTTGCATCAGTCAGAGATGACATGGCAAGCAACAAAATCCACCTGAAGCCCAAAACTGGAGGGATTAACATGCAACCAAAGAGGAACTCTTTTGAGAGCTATCCCCCAAAGAAAGCAGACTTCCGCCATTTGAATGGGGAtttcaaagggaaaaaaggCATCCCTGGAAGACCTTTGCATTCTTCTGCATCTAAGGGATCACTTCCTTCAGTGAATAGCTCCATGAACAAGTACAGACCTGTCTCAGGAGCCAGATCTGTTGAATCTCACAACTACAGGACTGCAGAATCACAGAACCATCTCCTGAGCCAATTGTTTGGCCAAAAATTAACCAGCTTTAAGATTCCTTTAAGGAAGGACAACTCTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80816 lncRNA upstream 456503 26433840 ~ 26435114 (+) True G64603
TU80814 lncRNA upstream 459464 26431674 ~ 26432153 (+) True G64601
TU80773 lncRNA upstream 674487 26216632 ~ 26217130 (+) True G64561
TU80771 lncRNA upstream 677889 26213377 ~ 26213728 (+) True G64559
TU80770 lncRNA upstream 678524 26212880 ~ 26213093 (+) True G64558
TU80926 lncRNA downstream 338832 27243120 ~ 27244109 (+) True G64702
TU81084 lncRNA downstream 1424692 28328980 ~ 28415277 (+) True G64823
TU81090 lncRNA downstream 1434747 28339035 ~ 28342230 (+) True G64829
TU81167 lncRNA downstream 2033600 28937888 ~ 28938164 (+) True G64894
TU81193 lncRNA downstream 2145205 29049493 ~ 29049815 (+) True G64916
AMCG00020630 mRNA upstream 384293 26489306 ~ 26507324 (+) True AMCG00020630
AMCG00020629 mRNA upstream 420432 26442375 ~ 26471185 (+) True AMCG00020629
AMCG00020626 mRNA upstream 462854 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020624 mRNA upstream 661053 26220630 ~ 26230564 (+) True AMCG00020624
AMCG00020621 mRNA upstream 794660 26055287 ~ 26096957 (+) True AMCG00020621
AMCG00020632 mRNA downstream 103579 27007867 ~ 27018076 (+) True AMCG00020632
AMCG00020634 mRNA downstream 216964 27121252 ~ 27131382 (+) True AMCG00020634
AMCG00020633 mRNA downstream 262484 27166772 ~ 27169656 (+) True AMCG00020633
AMCG00020638 mRNA downstream 276283 27180571 ~ 27228584 (+) True AMCG00020638
AMCG00020636 mRNA downstream 331549 27235837 ~ 27243013 (+) True AMCG00020636
TU80525 other upstream 1338297 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 1806863 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 1814927 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 2409503 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 2836025 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 511708 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 1969342 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 2104375 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 2560276 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 2621427 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile