RNA id: AMCG00020653


Basic Information

Item Value
RNA id AMCG00020653
length 735
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00020653
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27863475 ~ 28035409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTCTGCAGACAAAAGCGTCATTTCTCCATCGCTGCGACGATGCTACAATACAAAGgaattgAAAAACAGGTTAATGAAGCTTCAAGAGGGGCTTAGGAGTTTCGTTAAGCTGGCTGTACCCagaaaatgGTGTCTGCTGATCATGGGTTATAACTGGGCTAAGGTTATCCTCATTACAGCGGACGAAGCAGCAGTGGATTGTGTACCTGGCTTCCAGGAAAAGAGTTATGAATTGGAGTATGGTATAGGATTCAGAAAGGAAGAAGGCCTTCTGAAAGTGCACTTTGATGATTGCGCAGggaatgaaaatgtgaagttCGATGTTTCTCACCCAGACTTCACAGTGGATGAAGATGGATCGCTGGTCCCAGTTCGAGACGTCACAGACATTGAGACAGTTCTGTTCATCCACGGCAGGAGTGCCCATTCAGATGACATGGCAGAGGTCAAAATATTTGGGGCTCCAAAGAGACGTCCTCAGACTCTGAAGGTAAGTGGAGTTTGGGAAGCAGGGCAGAAAAAGGCCACCACCAGCATCTCAGAGCCAGGATGCAAACTCTCTTCAGACTGGCTCCTCGGCACAGAGATTCTGGGGCTTGGCCAAAGTCTACCAAATAGGATGAAAAGGTCTCTCTTGGTTCCAGACATGTCTGTACCTGAAAATCAGAGGGCCCCATTTCCCAGACCCATTGGCAAGCGGCAGCCCCGTTACAGGGCTCTAAGGTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 442829 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 627153 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 1117652 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 1131187 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 1133364 26729855 ~ 26730111 (-) True G64629
TU81054 lncRNA upstream 126193 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 150200 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 150200 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 281360 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 822580 28857989 ~ 28858354 (-) True G64886
AMCG00020652 mRNA downstream 5857 27795256 ~ 27857618 (-) True AMCG00020652
AMCG00020651 mRNA downstream 77450 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020650 mRNA downstream 151771 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020649 mRNA downstream 339927 27522624 ~ 27523548 (-) True AMCG00020649
AMCG00020646 mRNA downstream 388743 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020658 mRNA upstream 101821 28137230 ~ 28147847 (-) True AMCG00020658
AMCG00020657 mRNA upstream 143312 28178721 ~ 28191734 (-) True AMCG00020657
AMCG00020659 mRNA upstream 215464 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020661 mRNA upstream 289628 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020662 mRNA upstream 293576 28328985 ~ 28342177 (-) True AMCG00020662
TU80934 other downstream 613799 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1944845 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1957864 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2532905 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2560494 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 191126 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 289898 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 753171 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1345906 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1494510 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile